Vilkas Marius J, Zhan Chang-Guo
Department of Pharmaceutical Sciences, College of Pharmacy, University of Kentucky, 725 Rose Street, Lexington, Kentucky 40536, USA.
J Chem Phys. 2008 Nov 21;129(19):194109. doi: 10.1063/1.3020767.
An efficient algorithm of the surface and volume polarization for electrostatics (SVPE) method in self-consistent reaction field (SCRF) theory, denoted by SV(1)PE, has been proposed to simulate direct volume polarization potential with a single layer of point charges outside the solute cavity while the indirect effects of volume polarization on surface polarization are still simulated with multiple layers of point charges. The free energies of solvation calculated using the SV(1)PE algorithm (implemented in GAUSSIAN03) reproduce the corresponding values calculated using the standard SVPE implementation within an error of only approximately 0.1% when the solute cavity is defined by the standard 0.001e/a(0) (3) solute charge isodensity contour. The SV(1)PE results are much less sensitive to the used cavity size in comparison with the well-established surface and simulated volume polarization for electrostatics [SS(V)PE] method which simulates volume polarization through an additional surface charge distribution on the cavity surface. The SCRF calculations using the SV(1)PE method are more efficient than those using the original SVPE method.
在自洽反应场(SCRF)理论中,一种用于静电学的表面和体积极化有效算法(SVPE),记为SV(1)PE,已被提出。该算法用溶质腔外的单层点电荷来模拟直接体积极化势,而体积极化对表面极化的间接影响仍用多层点电荷来模拟。当溶质腔由标准的0.001e/a(0)(3)溶质电荷等密度轮廓定义时,使用SV(1)PE算法(在GAUSSIAN03中实现)计算的溶剂化自由能,与使用标准SVPE实现计算的相应值相比,再现误差仅约为0.1%。与已成熟的静电学表面和模拟体积极化[SS(V)PE]方法相比,SV(1)PE结果对所用腔尺寸的敏感性要低得多,SS(V)PE方法通过在腔表面的额外表面电荷分布来模拟体积极化。使用SV(1)PE方法的SCRF计算比使用原始SVPE方法更高效。