Zhu Yanyan, Chen Zhanfen, Guo Zijian, Wang Yan, Chen Guangju
College of Chemistry, Beijing Normal University, 19# Xinjiekouwai street, Haidian district, Beijing 100875, People's Republic of China.
J Mol Model. 2009 May;15(5):469-79. doi: 10.1007/s00894-008-0432-7. Epub 2008 Dec 13.
Theoretical studies on the coordination stabilities, spectra and DNA-binding trend for the series of metal-varied complexes, M(IDB)Cl2 (M = Mn, Fe, Co, Ni, Cu and Zn; IDB = N, N-bis(2-benzimidazolylmethyl) amine), have been carried out by using the DFT/B3LYP method and PCM model. The calculated coordination stabilities (S) for these complexes present a trend of S(Ni) > S(Co) > S(Fe) > S(Cu) > S(Zn) > S(Mn). It has been estimated from the molecular orbital energies of the complexes that the DNA-binding affinities (A) of the complexes are in the order of A(Zn) < A(Mn) < A(Fe) approximately A(Co) < A(Ni) < A(Cu). The studied results indicate that the Cu, Ni and Co complexes with large coordination stabilities present the low virtual orbitals, consequently yielding to the favorable DNA-binding affinities. The spectral properties of excitation energies and oscillator strengths for M(IDB)Cl2 in the ultraviolet region were calculated by TD-DFT/B3LYP method.
利用密度泛函理论(DFT)/B3LYP方法和极化连续介质模型(PCM),对一系列金属各异的配合物M(IDB)Cl2(M = Mn、Fe、Co、Ni、Cu和Zn;IDB = N,N-双(2-苯并咪唑基甲基)胺)的配位稳定性、光谱和DNA结合趋势进行了理论研究。计算得到的这些配合物的配位稳定性(S)呈现出S(Ni) > S(Co) > S(Fe) > S(Cu) > S(Zn) > S(Mn)的趋势。根据配合物的分子轨道能量估计,配合物与DNA的结合亲和力(A)顺序为A(Zn) < A(Mn) < A(Fe) ≈ A(Co) < A(Ni) < A(Cu)。研究结果表明,具有较大配位稳定性的Cu、Ni和Co配合物具有较低的虚拟轨道,因此具有良好的与DNA结合亲和力。采用含时密度泛函理论(TD-DFT)/B3LYP方法计算了M(IDB)Cl2在紫外区域的激发能和振子强度等光谱性质。