Söderhjelm Pär, Ryde Ulf
Department of Theoretical Chemistry, Lund University, Chemical Center, POB 124, SE-22100 Lund, Sweden.
J Phys Chem A. 2009 Jan 22;113(3):617-27. doi: 10.1021/jp8073514.
A new method to accurately estimate the interaction energy between a large molecule and a smaller ligand is presented. The method approximates the electrostatic and induction contributions classically by multipole and polarizability expansions, but uses explicit quantum-mechanical fragment calculations for the remaining (nonclassical) contributions, mainly dispersion and exchange repulsion. Thus, it represents a limit of how accurate a force field can ever become for interaction energies if pairwise additivity of the nonclassical term is assumed (e.g., all general-purpose force fields). The accuracy is tested by considering protein-ligand model systems for which the true MP2/6-31G* interaction energies can be computed. The method is shown to be more accurate than related fragmentation approaches. The remaining error (2-5 and approximately10 kJ/mol for neutral and charged ligands, respectively) can be decreased by including the polarizing effect from surrounding fragments in the quantum-mechanical calculations.
提出了一种准确估计大分子与较小配体之间相互作用能的新方法。该方法通过多极和极化率展开经典地近似静电和诱导贡献,但对其余(非经典)贡献,主要是色散和交换排斥,使用显式量子力学片段计算。因此,如果假设非经典项的成对加和性(例如,所有通用力场),它代表了力场在相互作用能方面所能达到的精度极限。通过考虑可以计算真实MP2/6 - 31G*相互作用能的蛋白质 - 配体模型系统来测试该方法的准确性。结果表明该方法比相关的片段化方法更准确。通过在量子力学计算中纳入周围片段的极化效应,可以降低剩余误差(中性和带电配体分别为2 - 5和大约10 kJ/mol)。