WebGBrowse——一款用于GBrowse的网络服务器。

WebGBrowse--a web server for GBrowse.

作者信息

Podicheti Ram, Gollapudi Rajesh, Dong Qunfeng

机构信息

Center for Genomics and Bioinformatics, Indiana University, Bloomington, IN 47405, USA.

出版信息

Bioinformatics. 2009 Jun 15;25(12):1550-1. doi: 10.1093/bioinformatics/btp239. Epub 2009 Apr 8.

DOI:10.1093/bioinformatics/btp239

PMID:19357095

Abstract

SUMMARY

The Generic Genome Browser (GBrowse) is one of the most widely used tools for visualizing genomic features along a reference sequence. However, the installation and configuration of GBrowse is not trivial for biologists. We have developed a web server, WebGBrowse that allows users to upload genome annotation in the GFF3 format, configure the display of each genomic feature by simply using a web browser and visualize the configured genomic features with the integrated GBrowse software.

AVAILABILITY

WebGBrowse is accessible via http://webgbrowse.cgb.indiana.edu/ and the system is also freely available for local installations.

摘要

通用基因组浏览器（GBrowse）是用于沿参考序列可视化基因组特征的最广泛使用的工具之一。然而，对于生物学家来说，GBrowse的安装和配置并非易事。我们开发了一个网络服务器WebGBrowse，它允许用户上传GFF3格式的基因组注释，通过简单地使用网络浏览器配置每个基因组特征的显示，并使用集成的GBrowse软件可视化配置好的基因组特征。