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本文引用的文献

1
Incorporating dipolar solvents with variable density in Poisson-Boltzmann electrostatics.在泊松-玻尔兹曼静电学中纳入具有可变密度的偶极溶剂。
Biophys J. 2008 Dec 15;95(12):5587-605. doi: 10.1529/biophysj.108.131649. Epub 2008 Sep 26.
2
Influence of nonlinear electrostatics on transfer energies between liquid phases: charge burial is far less expensive than Born model.非线性静电学对液相之间转移能量的影响:电荷埋藏比玻恩模型成本低得多。
Proc Natl Acad Sci U S A. 2008 Aug 12;105(32):11146-51. doi: 10.1073/pnas.0804506105. Epub 2008 Aug 4.
3
Solvation effect on conformations of 1,2:dimethoxyethane: charge-dependent nonlinear response in implicit solvent models.溶剂化对1,2-二甲氧基乙烷构象的影响:隐式溶剂模型中电荷依赖性非线性响应
J Chem Phys. 2008 Jan 21;128(3):034501. doi: 10.1063/1.2815764.
4
Hydration free energies of monovalent ions in transferable intermolecular potential four point fluctuating charge water: an assessment of simulation methodology and force field performance and transferability.可转移分子间势四点波动电荷水中单价离子的水合自由能:模拟方法、力场性能及可转移性评估
J Chem Phys. 2007 Aug 14;127(6):064509. doi: 10.1063/1.2771550.
5
PDB_Hydro: incorporating dipolar solvents with variable density in the Poisson-Boltzmann treatment of macromolecule electrostatics.PDB_Hydro:在大分子静电学的泊松-玻尔兹曼处理中纳入密度可变的偶极溶剂。
Nucleic Acids Res. 2006 Jul 1;34(Web Server issue):W38-42. doi: 10.1093/nar/gkl072.
6
Modeling water, the hydrophobic effect, and ion solvation.模拟水、疏水效应和离子溶剂化。
Annu Rev Biophys Biomol Struct. 2005;34:173-99. doi: 10.1146/annurev.biophys.34.040204.144517.
7
Energetic coupling between DNA bending and base pair opening.DNA弯曲与碱基对打开之间的能量耦合。
Proc Natl Acad Sci U S A. 1988 Oct;85(19):7231-5. doi: 10.1073/pnas.85.19.7231.
8
Calculations of electrostatic energies in proteins. The energetics of ionized groups in bovine pancreatic trypsin inhibitor.蛋白质中静电能的计算。牛胰蛋白酶抑制剂中离子化基团的能量学
J Mol Biol. 1985 Sep 20;185(2):389-404. doi: 10.1016/0022-2836(85)90411-5.
9
Theoretical studies of enzymic reactions: dielectric, electrostatic and steric stabilization of the carbonium ion in the reaction of lysozyme.酶促反应的理论研究:溶菌酶反应中碳正离子的介电、静电和空间稳定作用
J Mol Biol. 1976 May 15;103(2):227-49. doi: 10.1016/0022-2836(76)90311-9.

使用偶极泊松模型计算离子溶剂化自由能。

Computing ion solvation free energies using the dipolar Poisson model.

作者信息

Koehl Patrice, Orland Henri, Delarue Marc

出版信息

J Phys Chem B. 2009 Apr 30;113(17):5694-7. doi: 10.1021/jp9010907.

DOI:10.1021/jp9010907
PMID:19385689
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC2836240/
Abstract

A new continuum model is presented for computing the solvation free energies of cations in water. It combines in a single formalism based on statistical thermodynamics the Poisson model for electrostatics with the Langevin dipole model to account for nonuniform water dipole distribution around the ions. An excellent match between experimental and computed solvation free energies is obtained for 10 monovalent and divalent ions.

摘要

提出了一种新的连续介质模型,用于计算阳离子在水中的溶剂化自由能。它基于统计热力学,将静电泊松模型与朗之万偶极子模型结合在单一形式体系中,以考虑离子周围水偶极分布的不均匀性。对于10种单价和二价离子,实验得到的溶剂化自由能与计算值之间实现了极佳的匹配。