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二聚体/寡聚体DNA甲基转移酶:一个未完成的故事。

Dimeric/oligomeric DNA methyltransferases: an unfinished story.

作者信息

Malygin Ernst G, Evdokimov Alexey A, Hattman Stanley

机构信息

State Research Center of Virology and Biotechnology Vector, Novosibirsk, Russia.

出版信息

Biol Chem. 2009 Sep;390(9):835-44. doi: 10.1515/BC.2009.082.

DOI:10.1515/BC.2009.082
PMID:19453271
Abstract

DNA methyltransferases (MTases) are enzymes that carry out post-replicative sequence-specific modifications. The initial experimental data on the structure and kinetic characteristics of the EcoRI MTase led to the paradigm that type II systems comprise dimeric endonucleases and monomeric MTases. In retrospect, this was logical because, while the biological substrate of the restriction endonuclease is two-fold symmetrical, the in vivo substrate for the MTase is generally hemi-methylated and, hence, inherently asymmetric. Thus, the paradigm was extended to include all DNA MTases except the more complex bifunctional type I and type III enzymes. Nevertheless, a gradual enlightenment grew over the last decade that has changed the accepted view on the structure of DNA MTases. These results necessitate a more complex view of the structure and function of these important enzymes.

摘要

DNA甲基转移酶(MTases)是一类进行复制后序列特异性修饰的酶。关于EcoRI甲基转移酶结构和动力学特性的最初实验数据形成了一种范式,即II型系统由二聚体内切核酸酶和单体甲基转移酶组成。回顾起来,这是合乎逻辑的,因为虽然限制性内切核酸酶的生物学底物是二重对称的,但甲基转移酶在体内的底物通常是半甲基化的,因此本质上是不对称的。因此,该范式扩展到包括除更复杂的双功能I型和III型酶之外的所有DNA甲基转移酶。然而,在过去十年中逐渐有了新的认识,这改变了人们对DNA甲基转移酶结构的公认观点。这些结果需要对这些重要酶的结构和功能有更复杂的认识。

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1
Dimeric/oligomeric DNA methyltransferases: an unfinished story.二聚体/寡聚体DNA甲基转移酶:一个未完成的故事。
Biol Chem. 2009 Sep;390(9):835-44. doi: 10.1515/BC.2009.082.
2
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The use of prokaryotic DNA methyltransferases as experimental and analytical tools in modern biology.原核生物DNA甲基转移酶在现代生物学中作为实验和分析工具的应用。
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DNA methyltransferases: mechanistic models derived from kinetic analysis.DNA 甲基转移酶:从动力学分析中得出的机制模型。
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[The unique FauI restriction-modification system: cloning and comparative analysis of protein structure].[独特的FauI限制修饰系统:蛋白质结构的克隆与比较分析]
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Eukaryotic DNA methyltransferases--structure and function.真核生物DNA甲基转移酶——结构与功能
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引用本文的文献

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Intrafamily heterooligomerization as an emerging mechanism of methyltransferase regulation.家族内异寡聚化作为一种新兴的甲基转移酶调控机制。
Epigenetics Chromatin. 2024 Mar 1;17(1):5. doi: 10.1186/s13072-024-00530-0.
2
A model for the evolution of prokaryotic DNA restriction-modification systems based upon the structural malleability of Type I restriction-modification enzymes.基于 I 型限制修饰酶结构可变性的原核 DNA 限制修饰系统进化模型。
Nucleic Acids Res. 2018 Sep 28;46(17):9067-9080. doi: 10.1093/nar/gky760.
3
Type III restriction endonucleases are heterotrimeric: comprising one helicase-nuclease subunit and a dimeric methyltransferase that binds only one specific DNA.
III 型限制内切酶是异源三聚体:由一个解旋酶-核酸酶亚基和一个二聚体甲基转移酶组成,后者仅与一种特定的 DNA 结合。
Nucleic Acids Res. 2014 Apr;42(8):5139-50. doi: 10.1093/nar/gku122. Epub 2014 Feb 7.
4
Type I restriction enzymes and their relatives.I 型限制酶及其相关酶。
Nucleic Acids Res. 2014 Jan;42(1):20-44. doi: 10.1093/nar/gkt847. Epub 2013 Sep 24.
5
Diverse functions of restriction-modification systems in addition to cellular defense.限制修饰系统除了具有细胞防御功能外,还有多种功能。
Microbiol Mol Biol Rev. 2013 Mar;77(1):53-72. doi: 10.1128/MMBR.00044-12.
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Organization of the BcgI restriction-modification protein for the transfer of one methyl group to DNA.BcgI 限制修饰蛋白的结构,用于将一个甲基转移至 DNA。
Nucleic Acids Res. 2013 Jan 7;41(1):405-17. doi: 10.1093/nar/gks1000. Epub 2012 Nov 11.
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Oligomerization of DNMT3A controls the mechanism of de novo DNA methylation.DNMT3A 寡聚化控制从头 DNA 甲基化的机制。
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Kinetics of Methylation by EcoP1I DNA Methyltransferase.EcoP1I DNA甲基转移酶的甲基化动力学
Enzyme Res. 2010 Jul 15;2010:302731. doi: 10.4061/2010/302731.