Nicolau Dan V, Armitage Judith P, Maini Philip K
Centre for Mathematical Biology, Mathematical Institute, University of Oxford, Oxford OX1 3LB, United Kingdom.
Comput Biol Chem. 2009 Aug;33(4):269-74. doi: 10.1016/j.compbiolchem.2009.06.003. Epub 2009 Jun 25.
E. coli does chemotaxis by performing a biased random walk composed of alternating periods of swimming (runs) and reorientations (tumbles). Tumbles are typically modelled as complete directional randomisations but it is known that in wild type E. coli, successive run directions are actually weakly correlated, with a mean directional difference of approximately 63 degrees. We recently presented a model of the evolution of chemotactic swimming strategies in bacteria which is able to quantitatively reproduce the emergence of this correlation. The agreement between model and experiments suggests that directional persistence may serve some function, a hypothesis supported by the results of an earlier model. Here we investigate the effect of persistence on chemotactic efficiency, using a spatial Monte Carlo model of bacterial swimming in a gradient, combined with simulations of natural selection based on chemotactic efficiency. A direct search of the parameter space reveals two attractant gradient regimes, (a) a low-gradient regime, in which efficiency is unaffected by directional persistence and (b) a high-gradient regime, in which persistence can improve chemotactic efficiency. The value of the persistence parameter that maximises this effect corresponds very closely with the value observed experimentally. This result is matched by independent simulations of the evolution of directional memory in a population of model bacteria, which also predict the emergence of persistence in high-gradient conditions. The relationship between optimality and persistence in different environments may reflect a universal property of random-walk foraging algorithms, which must strike a compromise between two competing aims: exploration and exploitation. We also present a new graphical way to generally illustrate the evolution of a particular trait in a population, in terms of variations in an evolvable parameter.
大肠杆菌通过执行一种有偏随机游走进行趋化作用,这种随机游走由交替出现的游动期(奔跑)和重新定向期(翻滚)组成。翻滚通常被建模为完全的方向随机化,但已知在野生型大肠杆菌中,连续的奔跑方向实际上存在弱相关性,平均方向差异约为63度。我们最近提出了一种细菌趋化游动策略的进化模型,该模型能够定量再现这种相关性的出现。模型与实验结果的一致性表明,方向持续性可能具有某种功能,这一假设得到了早期模型结果的支持。在这里,我们使用细菌在梯度中游动的空间蒙特卡罗模型,并结合基于趋化效率的自然选择模拟,研究持续性对趋化效率的影响。对参数空间的直接搜索揭示了两种吸引剂梯度状态,(a)低梯度状态,其中效率不受方向持续性的影响;(b)高梯度状态,其中持续性可以提高趋化效率。使这种效应最大化的持续性参数值与实验观察值非常接近。这一结果与模型细菌群体中方向记忆进化的独立模拟结果相匹配,这些模拟也预测了在高梯度条件下持续性的出现。不同环境中最优性与持续性之间的关系可能反映了随机游走觅食算法的一个普遍特性,该算法必须在两个相互竞争的目标之间取得平衡:探索和利用。我们还提出了一种新的图形方法,以可进化参数的变化来总体说明群体中特定性状的进化。