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新种黄疣孢菌,从一份红树林沉积物样本中分离得到。

Verrucosispora lutea sp. nov., isolated from a mangrove sediment sample.

作者信息

Liao Zhen-Lin, Tang Shu-Kun, Guo Lin, Zhang Yu-Qin, Tian Xin-Peng, Jiang Cheng-Lin, Xu Li-Hua, Li Wen-Jun

机构信息

Food Science College, South China Agricultural University, Guangzhou 510642, PR China.

出版信息

Int J Syst Evol Microbiol. 2009 Sep;59(Pt 9):2269-73. doi: 10.1099/ijs.0.008813-0. Epub 2009 Jul 20.

Abstract

A novel Gram-positive, aerobic, spore-forming actinobacterium, designated strain YIM 013T, was isolated from a mangrove sediment sample and subjected to a polyphasic taxonomic study. The peptidoglycan type was A1gamma and the major whole-cell sugars contained glucose and xylose. The phospholipids were diphosphatidylglycerol, phosphatidylethanolamine, phosphatidylinositol, phosphatidylinositol mannosides and some unknown phospholipids. The predominant menaquinone was MK-9(H4). The major fatty acids were iso-C15:0 and iso-C16:0. The genomic DNA G+C content was 69.3 mol%. blast search results based on an almost-complete 16S rRNA gene sequence showed that strain YIM 013T had the highest similarity with Verrucosispora gifhornensis DSM 44337T (98%) and phylogenetic analysis revealed that strain YIM 013T should be assigned to the genus Verrucosispora. The mean level of DNA-DNA relatedness between strain YIM 013T and V. gifhornensis DSM 44337T was 38.2%. Based on its phenotypic and genotypic characteristics, strain YIM 013T (=CCTCC AA207012T=KCTC 19195T) is proposed to be the type strain of a novel species, Verrucosispora lutea sp. nov.

摘要

从一份红树林沉积物样本中分离出一株新型革兰氏阳性、需氧、产孢放线菌,命名为菌株YIM 013T,并对其进行了多相分类研究。肽聚糖类型为A1γ型,主要全细胞糖包含葡萄糖和木糖。磷脂为双磷脂酰甘油、磷脂酰乙醇胺、磷脂酰肌醇、磷脂酰肌醇甘露糖苷和一些未知磷脂。主要甲基萘醌为MK-9(H4)。主要脂肪酸为异-C15:0和异-C16:0。基因组DNA G+C含量为69.3 mol%。基于近乎完整的16S rRNA基因序列的blast搜索结果表明,菌株YIM 013T与吉福尔疣孢菌DSM 44337T的相似性最高(98%),系统发育分析表明,菌株YIM 013T应归属于疣孢菌属。菌株YIM 013T与吉福尔疣孢菌DSM 44337T之间的DNA-DNA相关性平均水平为38.2%。基于其表型和基因型特征,菌株YIM 013T(=CCTCC AA207012T=KCTC 19195T)被提议作为一个新物种——黄色疣孢菌(Verrucosispora lutea sp. nov.)的模式菌株。

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