Institute of Physical Chemistry, Technische Universität Braunschweig, 38106 Braunschweig, Germany.
J Phys Chem B. 2009 Oct 1;113(39):13107-17. doi: 10.1021/jp9073587.
We studied the hole transfer across adenine bridges in double-stranded DNA by means of a multiscale approach, propagating the hole in the framework of time-dependent DFT coupled to classical molecular dynamics simulation using a QM/MM scheme. The hole transfer in DNA is codetermined by the large fluctuations of site energies on the order of 0.4 eV, induced by the solvent degrees of freedom. These fluctuations lead to charge-transfer active conformations with large transfer efficiency, which are characterized by a favorable alignment of site energies along the DNA strand. This reduces the barrier for the hole transfer dramatically. Consequently, we find that a charge hopping mechanism is operative already for short bridges with fewer than four adenines, in contrast to the charge-transfer models assuming static DNA structures, where only tunneling occurs. The solvent fluctuations introduce a significant correlation between neighboring sites, enhancing the charge-transfer rate, while the fluctuation of electronic couplings has only a minor impact on the charge-transfer characteristics. Our results emphasize the importance of an accurate description of solvent effects as well as proper sampling, and it is suggested that charge transfer in DNA is gated by the dynamics of solvent.
我们通过多尺度方法研究了双链 DNA 中腺嘌呤桥的空穴转移,通过使用 QM/MM 方案将空穴在与时间相关的 DFT 框架中传播,同时进行经典分子动力学模拟。DNA 中的空穴转移由 0.4 eV 左右的大的位能波动决定,这些波动由溶剂自由度引起。这些波动导致具有高转移效率的电荷转移活性构象,其特征是沿 DNA 链的位能有利地对齐。这极大地降低了空穴转移的势垒。因此,我们发现,与假设 DNA 结构静态的电荷转移模型不同,对于少于四个腺嘌呤的短桥,已经存在电荷跳跃机制,而在这种模型中,仅发生隧道效应。溶剂波动在相邻位点之间引入了显著的相关性,从而提高了电荷转移速率,而电子耦合的波动对电荷转移特性的影响较小。我们的结果强调了准确描述溶剂效应以及适当采样的重要性,并表明 DNA 中的电荷转移受溶剂动力学的控制。