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胆碱缺乏会改变钙结合蛋白 1 基因 Re1 位点的组蛋白整体甲基化和表观遗传标记。

Choline deficiency alters global histone methylation and epigenetic marking at the Re1 site of the calbindin 1 gene.

机构信息

UNC Nutrition Research Institute at Kannapolis, University of North Carolina, 500 Laureate Way, Kannapolis, NC 28081, USA.

出版信息

FASEB J. 2010 Jan;24(1):184-95. doi: 10.1096/fj.09-140145. Epub 2009 Sep 14.

DOI:10.1096/fj.09-140145
PMID:19752176
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC2797040/
Abstract

Maternal choline availability is essential for fetal neurogenesis. Choline deprivation (CD) causes hypomethylation of specific CpG islands in genes controlling cell cycling in fetal hippocampus. We now report that, in C57BL/6 mice, CD during gestational days 12-17 also altered methylation of the histone H3 in E17 fetal hippocampi. In the ventricular and subventricular zones, monomethyl-lysine 9 of H3 (H3K9me1) was decreased by 25% (P<0.01), and in the pyramidal layer, dimethyl-lysine 9 of H3 (H3K9me2) was decreased by 37% (P<0.05). These changes were region specific and were not observed in whole-brain preparations. Also, the same effects of CD on H3 methylation were observed in E14 neural progenitor cells (NPCs) in culture. Changes in G9a histone methyltransferase might mediate altered H3K9me2,1. Gene expression of G9a was decreased by 80% in CD NPCs (P<0.001). In CD, H3 was hypomethylated upstream of the RE1 binding site in the calbindin 1 promoter, and 1 CpG site within the calbindin1 promoter was hypermethylated. REST binding to RE1 (recruits G9a) was decreased by 45% (P<0.01) in CD. These changes resulted in increased expression of calbindin 1 in CD (260%; P<0.05). Thus, CD modulates histone methylation in NPCs, and this could underlie the observed changes in neurogenesis.

摘要

母体胆碱供应对于胎儿神经发生至关重要。胆碱剥夺(CD)导致控制胎儿海马细胞周期的基因中特定 CpG 岛的低甲基化。我们现在报告,在 C57BL/6 小鼠中,妊娠第 12-17 天的 CD 也改变了 E17 胎儿海马中的组蛋白 H3 的甲基化。在脑室和脑室下区,H3 的单甲基赖氨酸 9(H3K9me1)减少了 25%(P<0.01),而在锥体层,H3 的二甲基赖氨酸 9(H3K9me2)减少了 37%(P<0.05)。这些变化具有区域特异性,在全脑制剂中未观察到。此外,在培养中的 E14 神经祖细胞(NPC)中也观察到 CD 对 H3 甲基化的相同影响。G9a 组蛋白甲基转移酶的变化可能介导了 H3K9me2,1 的改变。CD NPC 中的 G9a 基因表达减少了 80%(P<0.001)。在 CD 中,钙结合蛋白 1 启动子的 RE1 结合位点上游的 H3 被低甲基化,并且钙结合蛋白 1 启动子内的 1 个 CpG 位点被高甲基化。RE1 结合的 REST(招募 G9a)减少了 45%(P<0.01)。这些变化导致 CD 中钙结合蛋白 1 的表达增加了 260%(P<0.05)。因此,CD 调节 NPC 中的组蛋白甲基化,这可能是观察到的神经发生变化的基础。

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Automethylation of G9a and its implication in wider substrate specificity and HP1 binding.G9a的自动甲基化及其在更广泛底物特异性和HP1结合中的意义。
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Jmjd1a and Jmjd2c histone H3 Lys 9 demethylases regulate self-renewal in embryonic stem cells.Jmjd1a和Jmjd2c组蛋白H3赖氨酸9去甲基化酶调控胚胎干细胞的自我更新。
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Gestational choline deficiency causes global and Igf2 gene DNA hypermethylation by up-regulation of Dnmt1 expression.孕期胆碱缺乏通过上调Dnmt1表达导致整体及Igf2基因DNA高甲基化。
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Chromatin crosstalk in development and disease: lessons from REST.发育与疾病中的染色质串扰:来自REST的启示
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Direct interaction between DNMT1 and G9a coordinates DNA and histone methylation during replication.DNMT1与G9a之间的直接相互作用在复制过程中协调DNA和组蛋白甲基化。
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RE1 Silencing transcription factor maintains a repressive chromatin environment in embryonic hippocampal neural stem cells.RE1沉默转录因子维持胚胎海马神经干细胞中的抑制性染色质环境。
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