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噪声对通过横向电子传输进行DNA测序的影响。

Effect of noise on DNA sequencing via transverse electronic transport.

作者信息

Krems Matt, Zwolak Michael, Pershin Yuriy V, Di Ventra Massimiliano

机构信息

Department of Physics, University of California, San Diego, La Jolla, California, USA.

出版信息

Biophys J. 2009 Oct 7;97(7):1990-6. doi: 10.1016/j.bpj.2009.06.055.

Abstract

Previous theoretical studies have shown that measuring the transverse current across DNA strands while they translocate through a nanopore or channel may provide a statistically distinguishable signature of the DNA bases, and may thus allow for rapid DNA sequencing. However, fluctuations of the environment, such as ionic and DNA motion, introduce important scattering processes that may affect the viability of this approach to sequencing. To understand this issue, we have analyzed a simple model that captures the role of this complex environment in electronic dephasing and its ability to remove charge carriers from current-carrying states. We find that these effects do not strongly influence the current distributions due to the off-resonant nature of tunneling through the nucleotides--a result we expect to be a common feature of transport in molecular junctions. In particular, only large scattering strengths, as compared to the energetic gap between the molecular states and the Fermi level, significantly alter the form of the current distributions. Since this gap itself is quite large, the current distributions remain protected from this type of noise, further supporting the possibility of using transverse electronic transport measurements for DNA sequencing.

摘要

先前的理论研究表明,在DNA链穿过纳米孔或通道时测量其横向电流,可能会提供DNA碱基在统计学上可区分的特征,从而有可能实现快速DNA测序。然而,环境波动,如离子和DNA的运动,会引入重要的散射过程,可能会影响这种测序方法的可行性。为了理解这个问题,我们分析了一个简单模型,该模型捕捉了这种复杂环境在电子退相干中的作用及其将电荷载流子从载流状态移除的能力。我们发现,由于穿过核苷酸的隧穿具有非共振性质,这些效应不会强烈影响电流分布——我们预计这一结果是分子结中输运的一个共同特征。特别是,只有与分子态和费米能级之间的能隙相比足够大的散射强度,才会显著改变电流分布的形式。由于这个能隙本身相当大,电流分布对这类噪声具有抗性,这进一步支持了利用横向电子输运测量进行DNA测序的可能性。

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