Kung Johannes W, Löffler Claudia, Dörner Katerina, Heintz Dimitri, Gallien Sébastien, Van Dorsselaer Alain, Friedrich Thorsten, Boll Matthias
Institute of Biochemistry, University of Leipzig, 04103 Leipzig, Germany.
Proc Natl Acad Sci U S A. 2009 Oct 20;106(42):17687-92. doi: 10.1073/pnas.0905073106. Epub 2009 Oct 6.
Aromatic compounds are widely distributed in nature and can only be biomineralized by microorganisms. In anaerobic bacteria, benzoyl-CoA (BCoA) is a central intermediate of aromatic degradation, and serves as substrate for dearomatizing BCoA reductases (BCRs). In facultative anaerobes, the mechanistically difficult reduction of BCoA to cyclohexa-1,5-dienoyl-1-carboxyl-CoA (dienoyl-CoA) is driven by a stoichiometric ATP hydrolysis, catalyzed by a soluble, three [4Fe-4S] cluster-containing BCR. In this work, an in vitro assay for BCR from the obligately anaerobic Geobacter metallireducens was established. It followed the reverse reaction, the formation of BCoA from dienoyl-CoA in the presence of various electron acceptors. The benzoate-induced activity was highly specific for dienoyl-CoA (K(m) = 24 +/- 4 microM). The corresponding oxygen-sensitive enzyme was purified by several chromatographic steps with a 115-fold enrichment and a yield of 18%. The 185-kDa enzyme comprised 73- and 20-kDa subunits, suggesting an alpha(2)beta(2)-composition. MS analysis revealed the subunits as products of the benzoate-induced bamBC genes. The alphabeta unit contained 0.9 W, 15 Fe, and 12.5 acid-labile sulfur. Results from EPR spectroscopy suggest the presence of one 3Fe-4S and three 4Fe-4S clusters per alphabeta unit; oxidized BamBC exhibited an EPR signal typical for a W(V) species. The FeS clusters and the W- cofactor could only be fully reduced by dienoyl-CoA. BamBC represents the prototype of a previously undescribed class of dearomatizing BCRs that differ completely from the ATP-dependent enzymes from facultative anaerobes.
芳香族化合物在自然界中广泛分布,且只能被微生物进行生物矿化。在厌氧细菌中,苯甲酰辅酶A(BCoA)是芳香族降解的核心中间体,并作为脱芳香化BCoA还原酶(BCR)的底物。在兼性厌氧菌中,将BCoA机械性地还原为难于实现的环己-1,5-二烯酰-1-羧基辅酶A(二烯酰辅酶A)是由化学计量的ATP水解驱动的,该反应由一种可溶性的、含有三个[4Fe-4S]簇的BCR催化。在这项工作中,建立了一种用于严格厌氧的金属还原地杆菌中BCR的体外测定方法。该方法遵循逆向反应,即在各种电子受体存在的情况下,由二烯酰辅酶A形成BCoA。苯甲酸诱导的活性对二烯酰辅酶A具有高度特异性(K(m)=24±4μM)。通过几个色谱步骤纯化了相应的对氧敏感的酶,富集了115倍,产率为18%。这种185 kDa的酶由73 kDa和20 kDa的亚基组成,表明其组成为α(2)β(2)。质谱分析表明这些亚基是苯甲酸诱导的bamBC基因的产物。αβ单元含有0.9个钨、15个铁和12.5个酸不稳定硫。电子顺磁共振光谱结果表明,每个αβ单元存在一个3Fe-4S簇和三个4Fe-4S簇;氧化的BamBC表现出典型的W(V)物种的电子顺磁共振信号。FeS簇和钨辅因子只能被二烯酰辅酶A完全还原。BamBC代表了一类以前未描述过的脱芳香化BCR的原型,它与兼性厌氧菌中依赖ATP的酶完全不同。