Suppr超能文献

协调分子伴侣加速折叠理论与实验证据。

Reconciling theories of chaperonin accelerated folding with experimental evidence.

机构信息

Department of Chemistry and Biochemistry, University of California, Santa Barbara, CA 93106, USA.

出版信息

Cell Mol Life Sci. 2010 Jan;67(2):255-76. doi: 10.1007/s00018-009-0164-6. Epub 2009 Oct 23.

Abstract

For the last 20 years, a large volume of experimental and theoretical work has been undertaken to understand how chaperones like GroEL can assist protein folding in the cell. The most accepted explanation appears to be the simplest: GroEL, like most other chaperones, helps proteins fold by preventing aggregation. However, evidence suggests that, under some conditions, GroEL can play a more active role by accelerating protein folding. A large number of models have been proposed to explain how this could occur. Focused experiments have been designed and carried out using different protein substrates with conclusions that support many different mechanisms. In the current article, we attempt to see the forest through the trees. We review all suggested mechanisms for chaperonin-mediated folding and weigh the plausibility of each in light of what we now know about the most stringent, essential, GroEL-dependent protein substrates.

摘要

在过去的 20 年中,人们进行了大量的实验和理论研究,以了解 GroEL 等伴侣蛋白如何帮助细胞内的蛋白质折叠。最被广泛接受的解释似乎也是最简单的:GroEL 像大多数其他伴侣蛋白一样,通过防止聚集来帮助蛋白质折叠。然而,有证据表明,在某些条件下,GroEL 可以通过加速蛋白质折叠来发挥更积极的作用。已经提出了大量的模型来解释这是如何发生的。使用不同的蛋白质底物进行了有针对性的实验,并得出了支持许多不同机制的结论。在当前的文章中,我们试图透过现象看本质。我们回顾了所有关于伴侣蛋白介导折叠的机制,并根据我们现在对最严格、最基本、依赖 GroEL 的蛋白质底物的了解,权衡每种机制的合理性。

相似文献

1
Reconciling theories of chaperonin accelerated folding with experimental evidence.
Cell Mol Life Sci. 2010 Jan;67(2):255-76. doi: 10.1007/s00018-009-0164-6. Epub 2009 Oct 23.
2
Active cage mechanism of chaperonin-assisted protein folding demonstrated at single-molecule level.
J Mol Biol. 2014 Jul 29;426(15):2739-54. doi: 10.1016/j.jmb.2014.04.018. Epub 2014 May 6.
4
GroEL-assisted protein folding: does it occur within the chaperonin inner cavity?
Int J Mol Sci. 2009 May 12;10(5):2066-2083. doi: 10.3390/ijms10052066.
5
The GroEL-GroES Chaperonin Machine: A Nano-Cage for Protein Folding.
Trends Biochem Sci. 2016 Jan;41(1):62-76. doi: 10.1016/j.tibs.2015.07.009. Epub 2015 Sep 25.
6
Kinetic model for the coupling between allosteric transitions in GroEL and substrate protein folding and aggregation.
J Mol Biol. 2008 Apr 4;377(4):1279-95. doi: 10.1016/j.jmb.2008.01.059. Epub 2008 Jan 31.
7
Chaperones GroEL/GroES accelerate the refolding of a multidomain protein through modulating on-pathway intermediates.
J Biol Chem. 2014 Jan 3;289(1):286-98. doi: 10.1074/jbc.M113.518373. Epub 2013 Nov 18.
9
GroEL-mediated protein folding: making the impossible, possible.
Crit Rev Biochem Mol Biol. 2006 Jul-Aug;41(4):211-39. doi: 10.1080/10409230600760382.
10
Essential role of the chaperonin folding compartment in vivo.
EMBO J. 2008 May 21;27(10):1458-68. doi: 10.1038/emboj.2008.77. Epub 2008 Apr 17.

引用本文的文献

2
Redefining Molecular Chaperones as Chaotropes.
Front Mol Biosci. 2021 Jun 14;8:683132. doi: 10.3389/fmolb.2021.683132. eCollection 2021.
3
Energy landscape remodeling mechanism of Hsp70-chaperone-accelerated protein folding.
Biophys J. 2021 May 18;120(10):1971-1983. doi: 10.1016/j.bpj.2021.03.013. Epub 2021 Mar 19.
4
Retardation of Folding Rates of Substrate Proteins in the Nanocage of GroEL.
Biochemistry. 2021 Feb 16;60(6):460-464. doi: 10.1021/acs.biochem.0c00903. Epub 2021 Jan 19.
5
Chloroplast Chaperonin-Mediated Targeting of a Thylakoid Membrane Protein.
Plant Cell. 2020 Dec;32(12):3884-3901. doi: 10.1105/tpc.20.00309. Epub 2020 Oct 22.
6
Substrate protein dependence of GroEL-GroES interaction cycle revealed by high-speed atomic force microscopy imaging.
Philos Trans R Soc Lond B Biol Sci. 2018 Jun 19;373(1749). doi: 10.1098/rstb.2017.0180.
7
The exclusive effects of chaperonin on the behavior of proteins with 52 knot.
PLoS Comput Biol. 2018 Mar 16;14(3):e1005970. doi: 10.1371/journal.pcbi.1005970. eCollection 2018 Mar.
8
GroEL actively stimulates folding of the endogenous substrate protein PepQ.
Nat Commun. 2017 Jun 30;8:15934. doi: 10.1038/ncomms15934.
9
Dynamic Complexes in the Chaperonin-Mediated Protein Folding Cycle.
Front Mol Biosci. 2016 Dec 8;3:80. doi: 10.3389/fmolb.2016.00080. eCollection 2016.
10
Visualizing chaperone-assisted protein folding.
Nat Struct Mol Biol. 2016 Jul;23(7):691-7. doi: 10.1038/nsmb.3237. Epub 2016 May 30.

本文引用的文献

1
The GroEL/GroES cis cavity as a passive anti-aggregation device.
FEBS Lett. 2009 Aug 20;583(16):2654-62. doi: 10.1016/j.febslet.2009.06.049. Epub 2009 Jul 3.
2
Converging concepts of protein folding in vitro and in vivo.
Nat Struct Mol Biol. 2009 Jun;16(6):574-81. doi: 10.1038/nsmb.1591.
3
Bimodal protein solubility distribution revealed by an aggregation analysis of the entire ensemble of Escherichia coli proteins.
Proc Natl Acad Sci U S A. 2009 Mar 17;106(11):4201-6. doi: 10.1073/pnas.0811922106. Epub 2009 Feb 27.
4
Chaperonin complex with a newly folded protein encapsulated in the folding chamber.
Nature. 2009 Jan 1;457(7225):107-10. doi: 10.1038/nature07479.
5
GroEL Recognizes an Amphipathic Helix and Binds to the Hydrophobic Side.
J Biol Chem. 2009 Feb 13;284(7):4324-31. doi: 10.1074/jbc.M804818200. Epub 2008 Dec 12.
6
Thermodynamics and kinetics of protein folding under confinement.
Proc Natl Acad Sci U S A. 2008 Dec 23;105(51):20233-8. doi: 10.1073/pnas.0807742105. Epub 2008 Dec 10.
7
Requirement for binding multiple ATPs to convert a GroEL ring to the folding-active state.
Proc Natl Acad Sci U S A. 2008 Dec 9;105(49):19205-10. doi: 10.1073/pnas.0810657105. Epub 2008 Dec 2.
8
Interactions between amino acid side chains in cylindrical hydrophobic nanopores with applications to peptide stability.
Proc Natl Acad Sci U S A. 2008 Nov 18;105(46):17636-41. doi: 10.1073/pnas.0803990105. Epub 2008 Nov 12.
9
Setting the chaperonin timer: the effects of K+ and substrate protein on ATP hydrolysis.
Proc Natl Acad Sci U S A. 2008 Nov 11;105(45):17334-8. doi: 10.1073/pnas.0807429105. Epub 2008 Nov 6.
10
Setting the chaperonin timer: a two-stroke, two-speed, protein machine.
Proc Natl Acad Sci U S A. 2008 Nov 11;105(45):17339-44. doi: 10.1073/pnas.0807418105. Epub 2008 Nov 6.

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍。

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

文档翻译

学术文献翻译模型,支持多种主流文档格式。

立即体验