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SeaView 版本 4:一个用于序列比对和系统发育树构建的多平台图形用户界面。

SeaView version 4: A multiplatform graphical user interface for sequence alignment and phylogenetic tree building.

出版信息

Mol Biol Evol. 2010 Feb;27(2):221-4. doi: 10.1093/molbev/msp259. Epub 2009 Oct 23.

Abstract

We present SeaView version 4, a multiplatform program designed to facilitate multiple alignment and phylogenetic tree building from molecular sequence data through the use of a graphical user interface. SeaView version 4 combines all the functions of the widely used programs SeaView (in its previous versions) and Phylo_win, and expands them by adding network access to sequence databases, alignment with arbitrary algorithm, maximum-likelihood tree building with PhyML, and display, printing, and copy-to-clipboard of rooted or unrooted, binary or multifurcating phylogenetic trees. In relation to the wide present offer of tools and algorithms for phylogenetic analyses, SeaView is especially useful for teaching and for occasional users of such software. SeaView is freely available at http://pbil.univ-lyon1.fr/software/seaview.

摘要

我们介绍 SeaView 版本 4,这是一个多平台程序,旨在通过图形用户界面促进分子序列数据的多重比对和系统发育树构建。SeaView 版本 4 结合了广泛使用的程序 SeaView(在其以前的版本中)和 Phylo_win 的所有功能,并通过添加对序列数据库的网络访问、与任意算法的对齐、使用 PhyML 进行最大似然树构建以及显示、打印和复制到剪贴板的无根或有根、二进制或多叉系统发育树来扩展它们。与广泛提供的系统发育分析工具和算法相比,SeaView 特别适用于教学和此类软件的偶尔用户。SeaView 可在 http://pbil.univ-lyon1.fr/software/seaview 免费获得。

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