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用于探究细胞中质膜-细胞骨架相互作用的系绳牵拉实验的计算分析。

Computational analysis of the tether-pulling experiment to probe plasma membrane-cytoskeleton interaction in cells.

作者信息

Schumacher Kristopher R, Popel Aleksander S, Anvari Bahman, Brownell William E, Spector Alexander A

机构信息

Department of Biomedical Engineering, Johns Hopkins University, Baltimore, Maryland 21205, USA.

出版信息

Phys Rev E Stat Nonlin Soft Matter Phys. 2009 Oct;80(4 Pt 1):041905. doi: 10.1103/PhysRevE.80.041905. Epub 2009 Oct 6.

DOI:10.1103/PhysRevE.80.041905
PMID:19905340
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC4990357/
Abstract

Tethers are thin membrane tubes that can be formed when relatively small and localized forces are applied to cellular membranes and lipid bilayers. Tether pulling experiments have been used to better understand the fine membrane properties. These include the interaction between the plasma membrane and the underlying cytoskeleton, which is an important factor affecting membrane mechanics. We use a computational method aimed at the interpretation and design of tether pulling experiments in cells with a strong membrane-cytoskeleton attachment. In our model, we take into account the detailed information in the topology of bonds connecting the plasma membrane and the cytoskeleton. We compute the force-dependent piecewise membrane deflection and bending as well as modes of stored energy in three major regions of the system: body of the tether, membrane-cytoskeleton attachment zone, and the transition zone between the two. We apply our method to three cells: cochlear outer hair cells (OHCs), human embryonic kidney (HEK) cells, and Chinese hamster ovary (CHO) cells. OHCs have a special system of pillars connecting the membrane and the cytoskeleton, and HEK and CHO cells have the membrane-cytoskeleton adhesion arrangement via bonds (e.g., PIP2), which is common to many other cells. We also present a validation of our model by using experimental data on CHO and HEK cells. The proposed method can be an effective tool in the analyses of experiments to probe the properties of cellular membranes.

摘要

系链是一种薄的膜管,当相对较小的局部力作用于细胞膜和脂质双层时就会形成。系链拉伸实验已被用于更好地理解精细的膜特性。这些特性包括质膜与下层细胞骨架之间的相互作用,这是影响膜力学的一个重要因素。我们使用一种计算方法,旨在解释和设计在具有强膜 - 细胞骨架附着的细胞中的系链拉伸实验。在我们的模型中,我们考虑了连接质膜和细胞骨架的键的拓扑结构中的详细信息。我们计算了系统三个主要区域中力依赖的分段膜偏转和弯曲以及储能模式:系链主体区域、膜 - 细胞骨架附着区域以及两者之间的过渡区域。我们将我们的方法应用于三种细胞:耳蜗外毛细胞(OHCs)、人胚肾(HEK)细胞和中国仓鼠卵巢(CHO)细胞。OHCs 具有连接膜和细胞骨架的特殊柱状系统,而 HEK 和 CHO 细胞通过键(例如磷脂酰肌醇 - 4,5 - 二磷酸,PIP2)具有膜 - 细胞骨架粘附排列,这在许多其他细胞中很常见。我们还通过使用 CHO 和 HEK 细胞的实验数据对我们的模型进行了验证。所提出的方法可以成为分析探测细胞膜特性实验的有效工具。

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本文引用的文献

1
Modeling the mechanics of tethers pulled from the cochlear outer hair cell membrane.模拟从耳蜗外毛细胞膜牵拉的系链的力学特性。
J Biomech Eng. 2008 Jun;130(3):031007. doi: 10.1115/1.2907758.
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Eukaryotic membrane tethers revisited using magnetic tweezers.利用磁镊重新审视真核细胞膜系链
Phys Biol. 2007 Apr 19;4(2):67-78. doi: 10.1088/1478-3975/4/2/001.
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Prestin modulates mechanics and electromechanical force of the plasma membrane.Prestin调节质膜的力学和机电力。
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Active elastic network: cytoskeleton of the red blood cell.活性弹性网络:红细胞的细胞骨架。
Phys Rev E Stat Nonlin Soft Matter Phys. 2007 Jan;75(1 Pt 1):011921. doi: 10.1103/PhysRevE.75.011921. Epub 2007 Jan 19.
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Standing wave total internal reflection fluorescence microscopy to measure the size of nanostructures in living cells.驻波全内反射荧光显微镜用于测量活细胞中纳米结构的大小。
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Essential helix interactions in the anion transporter domain of prestin revealed by evolutionary trace analysis.通过进化追踪分析揭示的prestin阴离子转运结构域中的关键螺旋相互作用。
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Continuous membrane-cytoskeleton adhesion requires continuous accommodation to lipid and cytoskeleton dynamics.连续的膜-细胞骨架粘附需要不断适应脂质和细胞骨架的动态变化。
Annu Rev Biophys Biomol Struct. 2006;35:417-34. doi: 10.1146/annurev.biophys.35.040405.102017.
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