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新型人鼻病毒株的全基因组序列和分析,该病毒株属于分化的 HRV-A 进化枝。

Full-genome sequence and analysis of a novel human rhinovirus strain within a divergent HRV-A clade.

机构信息

Department of Medicine, University of Maryland School of Medicine, 20 Penn Street, HSF-II, Room S-114, Baltimore, MD 21201, USA.

出版信息

Arch Virol. 2010;155(1):83-7. doi: 10.1007/s00705-009-0549-8. Epub 2009 Nov 20.

DOI:10.1007/s00705-009-0549-8
PMID:19936613
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC2910715/
Abstract

Genome sequences of human rhinoviruses (HRV) have primarily been from stocks collected in the 1960s, with genomes and phylogeny of modern HRVs remaining undefined. Here, two modern isolates (hrv-A101 and hrv-A101-v1) collected approximately 8 years apart were sequenced in their entirety. Incorporation into our full-genome HRV alignment with subsequent phylogenetic network inference indicated that these represent a unique HRV-A, localized within a distinct divergent clade. They appear to have resulted from recombination of the hrv-65 and hrv-78 lineages. These results support our contention that there are unrecognized distinct HRV-A strains, and that recombination is evident in currently circulating strains.

摘要

人类鼻病毒(HRV)的基因组序列主要来自 20 世纪 60 年代采集的病毒株,而现代 HRV 的基因组和系统发育仍然尚未明确。在这里,我们对大约相隔 8 年收集的两个现代分离株(hrv-A101 和 hrv-A101-v1)进行了全基因组测序。将它们整合到我们的全基因组 HRV 序列比对中,并进行随后的系统发育网络推断,表明它们代表了一个独特的 HRV-A 株,位于一个独特的分支中。它们似乎是由 hrv-65 和 hrv-78 两个谱系重组而来。这些结果支持我们的观点,即存在未被识别的独特 HRV-A 株,重组在当前流行的株系中很明显。

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本文引用的文献

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2
Novel human rhinoviruses and exacerbation of asthma in children.新型人类鼻病毒与儿童哮喘加重
Emerg Infect Dis. 2008 Nov;14(11):1793-6. doi: 10.3201/eid1411.080386.
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Viral pathogens in acute exacerbations of chronic obstructive pulmonary disease.慢性阻塞性肺疾病急性加重期的病毒病原体
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Emerg Infect Dis. 2008 Jun;14(6):944-7. doi: 10.3201/eid1406.080271.
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A recently identified rhinovirus genotype is associated with severe respiratory-tract infection in children in Germany.最近发现的一种鼻病毒基因型与德国儿童的严重呼吸道感染有关。
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