Max Planck Institute for Chemical Ecology, Department of Entomology, 07745 Jena, Germany.
BMC Genomics. 2010 Jan 14;11:29. doi: 10.1186/1471-2164-11-29.
The chemical components of sex pheromones have been determined for more than a thousand moth species, but so far only a handful of genes encoding enzymes responsible for the biosynthesis of these compounds have been identified. For understanding the evolution of moth sexual communication, it is essential to know which genes are involved in the production of specific pheromone components and what controls the variation in their relative frequencies in the pheromone blend. We used a transcriptomic approach to characterize the pheromone gland of the Noctuid moth Heliothis virescens, an important agricultural pest, in order to obtain substantial general sequence information and to identify a range of candidate genes involved in the pheromone biosynthetic pathway.
To facilitate identifying sets of genes involved in a broad range of processes and to capture rare transcripts, we developed our majority of ESTs from a normalized cDNA library of Heliothis virescens pheromone glands (PG). Combining these with a non-normalized library yielded a total of 17,233 ESTs, which assembled into 2,082 contigs and 6,228 singletons. Using BLAST searches of the NR and Swissprot databases we were able to identify a large number of putative unique gene elements (unigenes), which we compared to those derived from previous transcriptomic surveys of the larval stage of Heliothis virescens. The distribution of unigenes among GO Biological Process functional groups shows an overall similarity between PG and larval transcriptomes, but with distinct enrichment of specific pathways in the PG. In addition, we identified a large number of candidate genes in the pheromone biosynthetic pathways.
These data constitute one of the first large-scale EST-projects for Noctuidae, a much-needed resource for exploring these pest species. Our analysis shows a surprisingly complex transcriptome and we identified a large number of potential pheromone biosynthetic pathway and immune-related genes that can be applied to population and systematic studies of Heliothis virescens and other Noctuidae.
已经确定了超过一千种蛾类物种的性信息素的化学成分,但到目前为止,仅鉴定出少数负责这些化合物生物合成的酶编码基因。为了了解蛾类性通讯的进化,了解哪些基因参与特定信息素成分的产生以及控制信息素混合物中它们相对频率变化的因素至关重要。我们使用转录组学方法来描述重要农业害虫天蛾 Noctuid 夜蛾 Heliothis virescens 的信息素腺,以获得大量的一般序列信息,并鉴定出一系列参与信息素生物合成途径的候选基因。
为了便于识别广泛涉及的过程中的基因集,并捕获稀有转录本,我们从 Heliothis virescens 信息素腺(PG)的归一化 cDNA 文库中开发了我们的大多数 EST。将这些与非归一化文库相结合,总共产生了 17233 个 EST,这些 EST 组装成 2082 个 contigs 和 6228 个 singletons。使用 NR 和 Swissprot 数据库的 BLAST 搜索,我们能够鉴定出大量假定的独特基因元件(unigenes),并将其与来自 Heliothis virescens 幼虫阶段的先前转录组调查中获得的基因元件进行比较。unigenes 在 GO 生物过程功能组中的分布显示 PG 和幼虫转录组之间总体相似,但 PG 中特定途径的富集程度明显不同。此外,我们还在信息素生物合成途径中鉴定出了大量候选基因。
这些数据构成了 Noctuidae 中第一个大规模 EST 项目之一,这是探索这些害虫物种急需的资源。我们的分析显示出一个惊人复杂的转录组,并且我们鉴定出了大量潜在的信息素生物合成途径和免疫相关基因,可应用于 Heliothis virescens 和其他 Noctuidae 的种群和系统研究。