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FRT-seq:无扩增、链特异性转录组测序。

FRT-seq: amplification-free, strand-specific transcriptome sequencing.

机构信息

The Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, UK.

出版信息

Nat Methods. 2010 Feb;7(2):130-2. doi: 10.1038/nmeth.1417. Epub 2010 Jan 17.

DOI:10.1038/nmeth.1417
PMID:20081834
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC2861772/
Abstract

We report an alternative approach to transcriptome sequencing for the Illumina Genome Analyzer, in which the reverse transcription reaction takes place on the flowcell. No amplification is performed during the library preparation, so PCR biases and duplicates are avoided, and because the template is poly(A)(+) RNA rather than cDNA, the resulting sequences are necessarily strand-specific. The method is compatible with paired- or single-end sequencing.

摘要

我们报告了一种替代的 Illumina 基因组分析仪转录组测序方法,其中逆转录反应在流动槽上进行。在文库制备过程中不进行扩增,因此避免了 PCR 偏倚和重复,并且由于模板是 poly(A)(+) RNA 而不是 cDNA,因此得到的序列必然是链特异性的。该方法与配对或单端测序兼容。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/beb1/2861772/0ab878f5e1a3/ukmss-29098-f0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/beb1/2861772/ffc97002a0d3/ukmss-29098-f0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/beb1/2861772/0ab878f5e1a3/ukmss-29098-f0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/beb1/2861772/ffc97002a0d3/ukmss-29098-f0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/beb1/2861772/0ab878f5e1a3/ukmss-29098-f0002.jpg

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Nanopore microscope identifies RNA isoforms with structural colours.纳米孔显微镜可识别具有结构颜色的 RNA 异构体。
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HLA RNA Sequencing With Unique Molecular Identifiers Reveals High Allele-Specific Variability in mRNA Expression.HLA RNA 测序与独特分子标识符揭示了 mRNA 表达中的高等位基因特异性变异性。
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