Department of Medical Biophysics, University of Toronto, 610 University Avenue, Toronto, M5G 2M9, Canada.
Genome Biol. 2010;11(2):R13. doi: 10.1186/gb-2010-11-2-r13. Epub 2010 Feb 3.
A central goal of biogerontology is to identify robust gene-expression biomarkers of aging. Here we develop a method where the biomarkers are networks of genes selected based on age-dependent activity and a graph-theoretic property called modularity. Tested on Caenorhabditis elegans, our algorithm yields better biomarkers than previous methods - they are more conserved across studies and better predictors of age. We apply these modular biomarkers to assign novel aging-related functions to poorly characterized longevity genes.
生物衰老学的一个主要目标是确定可靠的与衰老相关的基因表达生物标志物。在这里,我们开发了一种方法,该方法中的生物标志物是基于年龄相关的活性和一种称为模块性的图论性质选择的基因网络。在秀丽隐杆线虫上进行测试,我们的算法产生的生物标志物优于以前的方法 - 它们在不同研究中更保守,并且是更好的年龄预测因子。我们将这些模块化生物标志物应用于为特征不明显的长寿基因赋予新的与衰老相关的功能。