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酮甾体异构酶为酶通过静电预组织起作用的观点提供了进一步的支持。

Ketosteroid isomerase provides further support for the idea that enzymes work by electrostatic preorganization.

机构信息

Department of Chemistry SGM 418, University of Southern California, 3620 McClintock Avenue, Los Angeles, CA 90089, USA.

出版信息

Proc Natl Acad Sci U S A. 2010 Mar 2;107(9):4075-80. doi: 10.1073/pnas.0914579107. Epub 2010 Feb 11.

Abstract

One of the best systems for exploring the origin of enzyme catalysis has been the reaction of ketosteroid isomerase (KSI). Studies of the binding of phenolates to KSI have been taken as proof that the electrostatic preorganization effect only makes a minor contribution to the binding of the real, multiring, transition state (TS). However, our simulation study has determined that the difference between the phenolates and the TS arises from the fact that the nonpolar state of the phenolate can rotate freely relative to the oxyanion hole and thus loses the preorganization contribution. A recent study explored the reactivity of both small and multiring systems and concluded that their similar reactivity contradicts our preorganization idea. Herein, we establish that the available experiments in fact provide what is perhaps the best proof and clarification of the preorganization idea and its crucial role in enzyme catalysis. First, we analyze the binding energy and the pK(a) of equilenin and identify direct experimental evidence for our prediction about the differential electrostatic stabilization of the large TS and the small phenolates. Subsequently, we show that the similar reactivity of the small and large systems is also due to an electrostatic preorganization effect but that this effect only appears in the intermediate state because the TS is not free to rotate. This establishes the electrostatic origin of enzyme catalysis. We also clarify the crucial importance of having a well-defined physical concept when examining catalytic effects and the need for quantitative tools for analyzing such effects.

摘要

探索酶催化起源的最佳系统之一是酮甾体异构酶 (KSI) 的反应。酚盐与 KSI 结合的研究已被证明,静电预组织效应仅对真实的多环过渡态 (TS) 的结合有较小的贡献。然而,我们的模拟研究确定,酚盐与 TS 的差异源于酚盐的非极性状态可以相对于氧阴离子穴自由旋转,从而失去预组织贡献。最近的一项研究探讨了小分子和多环系统的反应性,得出结论认为它们的相似反应性与我们的预组织观点相矛盾。在此,我们证明现有的实验实际上为预组织观点及其在酶催化中的关键作用提供了可能是最好的证明和澄清。首先,我们分析了 Equilenin 的结合能和 pK(a),并确定了直接的实验证据,证明了我们关于大 TS 和小分子酚盐的静电稳定化差异的预测。随后,我们表明,小分子和大环系统的相似反应性也归因于静电预组织效应,但该效应仅出现在中间态,因为 TS 不能自由旋转。这确立了酶催化的静电起源。我们还澄清了在检查催化效应时具有明确物理概念的重要性,以及分析此类效应所需的定量工具的必要性。

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