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双向振动探针揭示了溶液和酶活性部位中不同的电场方向。

A two-directional vibrational probe reveals different electric field orientations in solution and an enzyme active site.

机构信息

Department of Chemistry, Stanford University, Stanford, CA, USA.

Experimental Molecular Biophysics, Department of Physics, Freie Univeresität Berlin, Berlin, Germany.

出版信息

Nat Chem. 2022 Aug;14(8):891-897. doi: 10.1038/s41557-022-00937-w. Epub 2022 May 5.

Abstract

The catalytic power of an electric field depends on its magnitude and orientation with respect to the reactive chemical species. Understanding and designing new catalysts for electrostatic catalysis thus requires methods to measure the electric field orientation and magnitude at the molecular scale. We demonstrate that electric field orientations can be extracted using a two-directional vibrational probe by exploiting the vibrational Stark effect of both the C=O and C-D stretches of a deuterated aldehyde. Combining spectroscopy with molecular dynamics and electronic structure partitioning methods, we demonstrate that, despite distinct polarities, solvents act similarly in their preference for electrostatically stabilizing large bond dipoles at the expense of destabilizing small ones. In contrast, we find that for an active-site aldehyde inhibitor of liver alcohol dehydrogenase, the electric field orientation deviates markedly from that found in solvents, which provides direct evidence for the fundamental difference between the electrostatic environment of solvents and that of a preorganized enzyme active site.

摘要

电场的催化能力取决于其大小和相对于反应性化学物质的方向。因此,要理解和设计静电催化的新型催化剂,就需要能够在分子尺度上测量电场的方向和大小的方法。我们通过利用氘代醛的 C=O 和 C-D 伸缩振动的振动斯塔克效应,证明了使用双向振动探针可以提取电场方向。通过将光谱学与分子动力学和电子结构分区方法相结合,我们证明,尽管极性不同,但溶剂在偏爱静电稳定大键偶极子而不是破坏小键偶极子时的作用相似。相比之下,我们发现对于肝醇脱氢酶的活性部位醛抑制剂,电场方向明显偏离溶剂中的电场方向,这为溶剂的静电环境与预组织的酶活性部位的静电环境之间的根本差异提供了直接证据。

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