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预组织电场导致酮甾体异构酶催化反应中最小的几何重排。

A Preorganized Electric Field Leads to Minimal Geometrical Reorientation in the Catalytic Reaction of Ketosteroid Isomerase.

机构信息

Department of Chemistry, Stanford University, Stanford, California 94305-5012, United States.

出版信息

J Am Chem Soc. 2020 Jun 3;142(22):9993-9998. doi: 10.1021/jacs.0c00383. Epub 2020 May 19.

Abstract

Electrostatic interactions play a pivotal role in enzymatic catalysis and are increasingly modeled explicitly in computational enzyme design; nevertheless, they are challenging to measure experimentally. Using vibrational Stark effect (VSE) spectroscopy, we have measured electric fields inside the active site of the enzyme ketosteroid isomerase (KSI). These studies have shown that these fields can be unusually large, but it has been unclear to what extent they specifically stabilize the transition state (TS) relative to a ground state (GS). In the following, we use crystallography and computational modeling to show that KSI's intrinsic electric field is nearly perfectly oriented to stabilize the geometry of its reaction's TS. Moreover, we find that this electric field adjusts the orientation of its substrate in the ground state so that the substrate needs to only undergo minimal structural changes upon activation to its TS. This work provides evidence that the active site electric field in KSI is preorganized to facilitate catalysis and provides a template for how electrostatic preorganization can be measured in enzymatic systems.

摘要

静电相互作用在酶催化中起着关键作用,并且越来越多地在计算酶设计中被明确模拟;然而,它们在实验中难以测量。我们使用振动 Stark 效应(VSE)光谱法测量了酶酮甾体异构酶(KSI)活性位点内的电场。这些研究表明,这些电场可能非常大,但对于它们相对于基态(GS)具体稳定过渡态(TS)的程度尚不清楚。在接下来的内容中,我们使用晶体学和计算建模来表明 KSI 的固有电场几乎完全定向以稳定其反应 TS 的几何形状。此外,我们发现这个电场调整了其底物在基态中的取向,使得底物在其过渡态的激活过程中仅需要经历最小的结构变化。这项工作提供了证据表明 KSI 中的活性位点电场是预先组织的,以促进催化,并为如何在酶系统中测量静电预组织提供了模板。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0a98/7474534/6f684634fe24/nihms-1624258-f0002.jpg

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