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Characterizing the dynamics of CD4+ T cell priming within a lymph node.
J Immunol. 2010 Mar 15;184(6):2873-85. doi: 10.4049/jimmunol.0903117. Epub 2010 Feb 12.
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Predicting lymph node output efficiency using systems biology.
J Theor Biol. 2013 Oct 21;335:169-84. doi: 10.1016/j.jtbi.2013.06.016. Epub 2013 Jun 29.
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A comparison of random vs. chemotaxis-driven contacts of T cells with dendritic cells during repertoire scanning.
J Theor Biol. 2008 Feb 21;250(4):732-51. doi: 10.1016/j.jtbi.2007.10.015. Epub 2007 Oct 18.
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In vivo imaging of T cell priming.
Sci Signal. 2008 Mar 25;1(12):pt2. doi: 10.1126/stke.112pt2.
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Stable T cell-dendritic cell interactions precede the development of both tolerance and immunity in vivo.
Nat Immunol. 2005 Jul;6(7):707-14. doi: 10.1038/ni1210. Epub 2005 May 29.
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Distinguishing multiple roles of T cell and macrophage involvement in determining lymph node fates during Mycobacterium tuberculosis infection.
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A brief overview of mathematical modeling of the within-host dynamics of Mycobacterium tuberculosis.
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In silico agent-based modeling approach to characterize multiple in vitro tuberculosis infection models.
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cDC1 coordinate innate and adaptive responses in the omentum required for T cell priming and memory.
Sci Immunol. 2022 Sep 30;7(75):eabq7432. doi: 10.1126/sciimmunol.abq7432.
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Integrative lymph node-mimicking models created with biomaterials and computational tools to study the immune system.
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Lymph node swelling combined with temporary effector T cell retention aids T cell response in a model of adaptive immunity.
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Hybrid computational modeling demonstrates the utility of simulating complex cellular networks in type 1 diabetes.
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本文引用的文献

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Agent-based modeling of host-pathogen systems: The successes and challenges.
Inf Sci (N Y). 2009 Apr 29;179(10):1379-1389. doi: 10.1016/j.ins.2008.11.012.
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Investigating CTL mediated killing with a 3D cellular automaton.
PLoS Comput Biol. 2009 Aug;5(8):e1000466. doi: 10.1371/journal.pcbi.1000466. Epub 2009 Aug 21.
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Stromal cell contributions to the homeostasis and functionality of the immune system.
Nat Rev Immunol. 2009 Sep;9(9):618-29. doi: 10.1038/nri2588. Epub 2009 Jul 31.
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Deriving a germinal center lymphocyte migration model from two-photon data.
J Exp Med. 2008 Dec 22;205(13):3019-29. doi: 10.1084/jem.20081160. Epub 2008 Dec 1.
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Characterizing emergent properties of immunological systems with multi-cellular rule-based computational modeling.
Trends Immunol. 2008 Dec;29(12):589-99. doi: 10.1016/j.it.2008.08.006. Epub 2008 Oct 27.
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Cutting edge: TLR ligands increase TCR triggering by slowing peptide-MHC class I decay rates.
J Immunol. 2008 Oct 15;181(8):5199-203. doi: 10.4049/jimmunol.181.8.5199.
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Fibroblastic reticular cells guide T lymphocyte entry into and migration within the splenic T cell zone.
J Immunol. 2008 Sep 15;181(6):3947-54. doi: 10.4049/jimmunol.181.6.3947.
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A methodology for performing global uncertainty and sensitivity analysis in systems biology.
J Theor Biol. 2008 Sep 7;254(1):178-96. doi: 10.1016/j.jtbi.2008.04.011. Epub 2008 Apr 20.
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How antigen quantity and quality determine T-cell decisions in lymphoid tissue.
Mol Cell Biol. 2008 Jun;28(12):4040-51. doi: 10.1128/MCB.00136-08. Epub 2008 Apr 21.

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