Suppr超能文献

氢交换质谱法:它是什么,能告诉我们什么?

Hydrogen exchange mass spectrometry: what is it and what can it tell us?

机构信息

The Department of Chemistry & Chemical Biology and The Barnett Institute of Chemical & Biological Analysis, Northeastern University, Boston, MA 02115, USA.

出版信息

Anal Bioanal Chem. 2010 Jun;397(3):967-72. doi: 10.1007/s00216-010-3556-4. Epub 2010 Mar 1.

Abstract

Proteins are undoubtedly some of the most essential molecules of life. While much is known about many proteins, some aspects still remain mysterious. One particularly important aspect of understanding proteins is determining how structure helps dictate function. Continued development and implementation of biophysical techniques that provide information about protein conformation and dynamics is essential. In this review, we discuss hydrogen exchange mass spectrometry and how this method can be used to learn about protein conformation and dynamics. The basic concepts of the method are described, the workflow illustrated, and a few examples of its application are provided.

摘要

蛋白质无疑是生命中最重要的分子之一。虽然人们对许多蛋白质有了很多了解,但仍有一些方面还很神秘。了解蛋白质的一个特别重要的方面是确定结构如何帮助决定功能。继续开发和实施提供有关蛋白质构象和动力学信息的生物物理技术至关重要。在这篇综述中,我们讨论了氢交换质谱法,以及如何使用这种方法来了解蛋白质的构象和动力学。描述了该方法的基本概念,说明了工作流程,并提供了一些应用实例。

相似文献

1
Hydrogen exchange mass spectrometry: what is it and what can it tell us?
Anal Bioanal Chem. 2010 Jun;397(3):967-72. doi: 10.1007/s00216-010-3556-4. Epub 2010 Mar 1.
2
Hydrogen exchange and mass spectrometry: A historical perspective.
J Am Soc Mass Spectrom. 2006 Nov;17(11):1481-1489. doi: 10.1016/j.jasms.2006.06.006. Epub 2006 Jul 28.
3
Probing protein structure and dynamics by hydrogen exchange-mass spectrometry.
Curr Protoc Protein Sci. 2002 Aug;Chapter 17:17.6.1-17.6.18. doi: 10.1002/0471140864.ps1706s28.
4
Hydrogen-exchange mass spectrometry for the study of intrinsic disorder in proteins.
Biochim Biophys Acta. 2013 Jun;1834(6):1202-9. doi: 10.1016/j.bbapap.2012.10.009. Epub 2012 Oct 22.
5
Investigating solution-phase protein structure and dynamics by hydrogen exchange mass spectrometry.
Curr Protoc Protein Sci. 2009 Nov;Chapter 17:17.6.1-17.6.17. doi: 10.1002/0471140864.ps1706s58.
6
Investigating how intrinsically disordered regions contribute to protein function using HDX-MS.
Biochem Soc Trans. 2022 Dec 16;50(6):1607-1617. doi: 10.1042/BST20220206.
7
Hydrogen Exchange Mass Spectrometry.
Methods Enzymol. 2016;566:335-56. doi: 10.1016/bs.mie.2015.06.035. Epub 2015 Jul 27.
8
Mapping Protein-Ligand Interactions with Proteolytic Fragmentation, Hydrogen/Deuterium Exchange-Mass Spectrometry.
Methods Enzymol. 2016;566:357-404. doi: 10.1016/bs.mie.2015.08.010. Epub 2015 Oct 23.
9
Fragmentation hydrogen exchange mass spectrometry: a review of methodology and applications.
Protein Expr Purif. 2012 Jul;84(1):19-37. doi: 10.1016/j.pep.2012.04.009. Epub 2012 Apr 23.
10
Protein analysis by hydrogen exchange mass spectrometry.
Annu Rev Biophys Biomol Struct. 2003;32:1-25. doi: 10.1146/annurev.biophys.32.110601.142417. Epub 2003 Feb 18.

引用本文的文献

2
Temporal Resolution of Activity-Related Solvation Dynamics in the TIM Barrel Enzyme Murine Adenosine Deaminase.
ACS Catal. 2024 Apr 5;14(7):4554-4567. doi: 10.1021/acscatal.3c02687. Epub 2024 Mar 12.
3
Resolving chaperone-assisted protein folding on the ribosome at the peptide level.
Nat Struct Mol Biol. 2024 Dec;31(12):1888-1897. doi: 10.1038/s41594-024-01355-x. Epub 2024 Jul 10.
8
Antigenic mapping reveals sites of vulnerability on α-HCoV spike protein.
Commun Biol. 2022 Nov 4;5(1):1179. doi: 10.1038/s42003-022-04160-8.
9
Evolutionary adaptation of the protein folding pathway for secretability.
EMBO J. 2022 Dec 1;41(23):e111344. doi: 10.15252/embj.2022111344. Epub 2022 Aug 29.
10
Using hydrogen-deuterium exchange mass spectrometry to characterize Mtr4 interactions with RNA.
Methods Enzymol. 2022;673:475-516. doi: 10.1016/bs.mie.2022.04.002. Epub 2022 May 14.

本文引用的文献

1
Investigating solution-phase protein structure and dynamics by hydrogen exchange mass spectrometry.
Curr Protoc Protein Sci. 2009 Nov;Chapter 17:17.6.1-17.6.17. doi: 10.1002/0471140864.ps1706s58.
2
Analysis of protein conformation and dynamics by hydrogen/deuterium exchange MS.
Anal Chem. 2009 Oct 1;81(19):7870-5. doi: 10.1021/ac901154s.
5
Hydra: software for tailored processing of H/D exchange data from MS or tandem MS analyses.
BMC Bioinformatics. 2009 May 27;10:162. doi: 10.1186/1471-2105-10-162.
6
HD desktop: an integrated platform for the analysis and visualization of H/D exchange data.
J Am Soc Mass Spectrom. 2009 Apr;20(4):601-10. doi: 10.1016/j.jasms.2008.11.019. Epub 2008 Dec 6.
7
HDX-ESI-MS reveals enhanced conformational dynamics of the amyloidogenic protein beta(2)-microglobulin upon release from the MHC-1.
J Am Soc Mass Spectrom. 2009 Feb;20(2):278-86. doi: 10.1016/j.jasms.2008.10.005. Epub 2008 Oct 17.
9
High-speed and high-resolution UPLC separation at zero degrees Celsius.
Anal Chem. 2008 Sep 1;80(17):6815-20. doi: 10.1021/ac8008862. Epub 2008 Aug 2.
10
Abl N-terminal cap stabilization of SH3 domain dynamics.
Biochemistry. 2008 May 27;47(21):5795-803. doi: 10.1021/bi800446b. Epub 2008 May 2.

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍。

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

文档翻译

学术文献翻译模型,支持多种主流文档格式。

立即体验