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来自嗜纤维单胞菌的纤维二糖磷酸化酶的结晶及X射线衍射研究

Crystallization and X-ray diffraction studies of cellobiose phosphorylase from Cellulomonas uda.

作者信息

Van Hoorebeke Annelies, Stout Jan, Kyndt John, De Groeve Manu, Dix Ina, Desmet Tom, Soetaert Wim, Van Beeumen Jozef, Savvides Savvas N

机构信息

Unit for Structural Biology and Biophysics, Laboratory for Protein Biochemistry and Biomolecular Engineering, K. L. Ledeganckstraat 35, Ghent University, B-9000 Ghent, Belgium.

出版信息

Acta Crystallogr Sect F Struct Biol Cryst Commun. 2010 Mar 1;66(Pt 3):346-51. doi: 10.1107/S1744309110002642. Epub 2010 Feb 27.

Abstract

Disaccharide phosphorylases are able to catalyze both the synthesis and the breakdown of disaccharides and have thus emerged as attractive platforms for tailor-made sugar synthesis. Cellobiose phosphorylase from Cellulomonas uda (CPCuda) is an enzyme that belongs to glycoside hydrolase family 94 and catalyzes the reversible breakdown of cellobiose [beta-D-glucopyranosyl-(1,4)-D-glucopyranose] to alpha-D-glucose-1-phosphate and D-glucose. Crystals of ligand-free recombinant CPCuda and of its complexes with substrates and reaction products yielded complete X-ray diffraction data sets to high resolution using synchrotron radiation but suffered from significant variability in diffraction quality. In at least one case an intriguing space-group transition from a primitive monoclinic to a primitive orthorhombic lattice was observed during data collection. The structure of CPCuda was determined by maximum-likelihood molecular replacement, thus establishing a starting point for an investigation of the structural and mechanistic determinants of disaccharide phosphorylase activity.

摘要

二糖磷酸化酶能够催化二糖的合成与分解,因此已成为定制糖合成的有吸引力的平台。来自乌达纤维单胞菌的纤维二糖磷酸化酶(CPCuda)是一种属于糖苷水解酶家族94的酶,催化纤维二糖[β-D-吡喃葡萄糖基-(1,4)-D-吡喃葡萄糖]可逆分解为α-D-葡萄糖-1-磷酸和D-葡萄糖。无配体重组CPCuda及其与底物和反应产物的复合物的晶体,利用同步辐射产生了高分辨率的完整X射线衍射数据集,但衍射质量存在显著差异。在至少一个案例中,在数据收集过程中观察到了从原始单斜晶格到原始正交晶格的有趣空间群转变。通过最大似然分子置换确定了CPCuda的结构,从而为研究二糖磷酸化酶活性的结构和机制决定因素奠定了起点。

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