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嗜热厌氧菌来源的转化海藻糖磷酸化酶的结晶及X射线衍射研究

Crystallization and X-ray diffraction studies of inverting trehalose phosphorylase from Thermoanaerobacter sp.

作者信息

Van Hoorebeke Annelies, Stout Jan, Van der Meeren Ruben, Kyndt John, Van Beeumen Jozef, Savvides Savvas N

机构信息

Unit for Structural Biology and Biophysics, Laboratory for Protein Biochemistry and Biomolecular Engineering, K. L. Ledeganckstraat 35, Ghent University, B-9000 Ghent, Belgium.

出版信息

Acta Crystallogr Sect F Struct Biol Cryst Commun. 2010 Apr 1;66(Pt 4):442-7. doi: 10.1107/S1744309110005749. Epub 2010 Mar 31.

Abstract

Disaccharide phosphorylases are attractive enzymatic platforms for tailor-made sugar synthesis owing to their ability to catalyze both the synthesis and the breakdown of disaccharides. Trehalose phosphorylase from Thermoanaerobacter sp. (TP) is a glycoside hydrolase family 65 enzyme which catalyzes the reversible breakdown of trehalose [D-glucopyranosyl-alpha(1,1)alpha-D-glucopyranose] to beta-D-glucose 1-phosphate and D-glucose. Recombinant purified protein was produced in Escherichia coli and crystallized in space group P2(1)2(1)2(1). Crystals of recombinant TP were obtained in their native form and were soaked with glucose, with n-octyl-beta-D-glucoside and with trehalose. The crystals presented a number of challenges including an unusually large unit cell, with a c axis measuring 420 A, and variable diffraction quality. Crystal-dehydration protocols led to improvements in diffraction quality that were often dramatic, typically from 7-8 to 3-4 A resolution. The structure of recombinant TP was determined by molecular replacement to 2.8 A resolution, thus establishing a starting point for investigating the structural and mechanistic determinants of the disaccharide phosphorylase activity. To the best of our knowledge, this is the first crystal structure determination of an inverting trehalose phosphorylase.

摘要

由于二糖磷酸化酶能够催化二糖的合成与分解,因此它们是用于定制糖合成的有吸引力的酶平台。嗜热厌氧菌来源的海藻糖磷酸化酶(TP)是一种糖苷水解酶家族65的酶,它催化海藻糖[D-吡喃葡萄糖基-α(1,1)-α-D-吡喃葡萄糖]可逆分解为β-D-葡萄糖1-磷酸和D-葡萄糖。重组纯化蛋白在大肠杆菌中产生,并在空间群P2(1)2(1)2(1)中结晶。重组TP的晶体以天然形式获得,并用葡萄糖、正辛基-β-D-葡萄糖苷和海藻糖进行浸泡。这些晶体存在许多挑战,包括异常大的晶胞,其c轴长度为420 Å,以及可变的衍射质量。晶体脱水方案显著改善了衍射质量,通常从7-8 Å分辨率提高到3-4 Å分辨率。通过分子置换确定了重组TP的结构,分辨率达到2.8 Å,从而为研究二糖磷酸化酶活性的结构和机制决定因素奠定了基础。据我们所知,这是首次对一种转化型海藻糖磷酸化酶进行晶体结构测定。

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本文引用的文献

1
Phaser crystallographic software.
J Appl Crystallogr. 2007 Aug 1;40(Pt 4):658-674. doi: 10.1107/S0021889807021206. Epub 2007 Jul 13.
2
Post-crystallization treatments for improving diffraction quality of protein crystals.
Acta Crystallogr D Biol Crystallogr. 2005 Sep;61(Pt 9):1173-80. doi: 10.1107/S0907444905019451. Epub 2005 Aug 16.
6
Characterization of trehalose phosphorylase from Schizophyllum commune.
Biochem J. 1999 Jul 15;341 ( Pt 2)(Pt 2):385-93.
7
Purification and characterization of trehalose phosphorylase from the commercial mushroom Agaricus bisporus.
Biochim Biophys Acta. 1998 Sep 16;1425(1):177-88. doi: 10.1016/s0304-4165(98)00066-x.
8
Production of trehalose synthase from a basidiomycete, Grifola frondosa, in Escherichia coli.
Appl Microbiol Biotechnol. 1998 Aug;50(2):193-8. doi: 10.1007/s002530051276.
9
Improved R-factors for diffraction data analysis in macromolecular crystallography.
Nat Struct Biol. 1997 Apr;4(4):269-75. doi: 10.1038/nsb0497-269.

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