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镍超氧化物歧化酶三种半胱氨酸到丝氨酸突变体的光谱和计算研究:深入了解活性位点残基半胱氨酸 2 和半胱氨酸 6 所扮演的角色。

Spectroscopic and computational investigation of three Cys-to-Ser mutants of nickel superoxide dismutase: insight into the roles played by the Cys2 and Cys6 active-site residues.

机构信息

Department of Chemistry, University of Wisconsin-Madison, 53706, USA.

出版信息

J Biol Inorg Chem. 2010 Jun;15(5):777-93. doi: 10.1007/s00775-010-0641-2. Epub 2010 Mar 24.

Abstract

Nickel-dependent superoxide dismutase (NiSOD) is a member of a class of metalloenzymes that protect aerobic organisms from the damaging superoxide radical (O(2) (.-)). A distinctive and fascinating feature of NiSOD is the presence of active-site nickel-thiolate interactions involving the Cys2 and Cys6 residues. Mutation of one or both Cys residues to Ser prevents catalysis of O(2) (.-), demonstrating that both residues are necessary to support proper enzymatic activity (Ryan et al., J Biol Inorg Chem, 2010). In this study, we have employed a combined spectroscopic and computational approach to characterize three Cys-to-Ser (Cys --> Ser) mutants (C2S, C6S, and C2S/C6S NiSOD). Similar electronic absorption and magnetic circular dichroism spectra are observed for these mutants, indicating that they possess nearly identical active-site geometric and electronic structures. These spectroscopic data also reveal that the Ni(2+) ion in each mutant adopts a high-spin (S = 1) configuration, characteristic of a five- or six-coordinate ligand environment, as opposed to the low-spin (S = 0) configuration observed for the four-coordinate Ni(2+) center in the native enzyme. An analysis of the electronic absorption and magnetic circular dichroism data within the framework of density functional theory computations performed on a series of five- and six-coordinate C2S/C6S NiSOD models reveals that the active site of each Cys --> Ser mutant possesses an essentially six-coordinate Ni(2+) center with a rather weak axial bonding interaction. Factors contributing to the lack of catalytic activity displayed by the Cys --> Ser NiSOD mutants are explored.

摘要

镍依赖性超氧化物歧化酶(NiSOD)是一类金属酶的成员,可保护需氧生物免受超氧自由基(O2(-))的破坏。NiSOD 的一个独特而迷人的特征是存在涉及 Cys2 和 Cys6 残基的活性位点镍硫醇ate 相互作用。将一个或两个 Cys 残基突变为 Ser 可阻止 O2(-)的催化,这表明两个残基对于支持适当的酶活性都是必需的(Ryan 等人,J Biol Inorg Chem,2010)。在这项研究中,我们采用了一种组合的光谱和计算方法来表征三种 Cys-to-Ser(Cys --> Ser)突变体(C2S、C6S 和 C2S/C6S NiSOD)。这些突变体具有相似的电子吸收和磁圆二色光谱,表明它们具有几乎相同的活性位点几何和电子结构。这些光谱数据还表明,每个突变体中的 Ni(2+)离子采用高自旋(S = 1)构型,这是五或六配位配体环境的特征,而不是在天然酶中观察到的四配位 Ni(2+)中心的低自旋(S = 0)构型。在一系列五和六配位 C2S/C6S NiSOD 模型上进行的密度泛函理论计算的电子吸收和磁圆二色光谱数据分析表明,每个 Cys --> Ser 突变体的活性位点都具有一个基本的六配位 Ni(2+)中心,具有相当弱的轴向键合相互作用。探讨了导致 Cys --> Ser NiSOD 突变体缺乏催化活性的因素。

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