• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

镍超氧化物歧化酶三种半胱氨酸到丝氨酸突变体的光谱和计算研究:深入了解活性位点残基半胱氨酸 2 和半胱氨酸 6 所扮演的角色。

Spectroscopic and computational investigation of three Cys-to-Ser mutants of nickel superoxide dismutase: insight into the roles played by the Cys2 and Cys6 active-site residues.

机构信息

Department of Chemistry, University of Wisconsin-Madison, 53706, USA.

出版信息

J Biol Inorg Chem. 2010 Jun;15(5):777-93. doi: 10.1007/s00775-010-0641-2. Epub 2010 Mar 24.

DOI:10.1007/s00775-010-0641-2
PMID:20333422
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC2997571/
Abstract

Nickel-dependent superoxide dismutase (NiSOD) is a member of a class of metalloenzymes that protect aerobic organisms from the damaging superoxide radical (O(2) (.-)). A distinctive and fascinating feature of NiSOD is the presence of active-site nickel-thiolate interactions involving the Cys2 and Cys6 residues. Mutation of one or both Cys residues to Ser prevents catalysis of O(2) (.-), demonstrating that both residues are necessary to support proper enzymatic activity (Ryan et al., J Biol Inorg Chem, 2010). In this study, we have employed a combined spectroscopic and computational approach to characterize three Cys-to-Ser (Cys --> Ser) mutants (C2S, C6S, and C2S/C6S NiSOD). Similar electronic absorption and magnetic circular dichroism spectra are observed for these mutants, indicating that they possess nearly identical active-site geometric and electronic structures. These spectroscopic data also reveal that the Ni(2+) ion in each mutant adopts a high-spin (S = 1) configuration, characteristic of a five- or six-coordinate ligand environment, as opposed to the low-spin (S = 0) configuration observed for the four-coordinate Ni(2+) center in the native enzyme. An analysis of the electronic absorption and magnetic circular dichroism data within the framework of density functional theory computations performed on a series of five- and six-coordinate C2S/C6S NiSOD models reveals that the active site of each Cys --> Ser mutant possesses an essentially six-coordinate Ni(2+) center with a rather weak axial bonding interaction. Factors contributing to the lack of catalytic activity displayed by the Cys --> Ser NiSOD mutants are explored.

摘要

镍依赖性超氧化物歧化酶(NiSOD)是一类金属酶的成员,可保护需氧生物免受超氧自由基(O2(-))的破坏。NiSOD 的一个独特而迷人的特征是存在涉及 Cys2 和 Cys6 残基的活性位点镍硫醇ate 相互作用。将一个或两个 Cys 残基突变为 Ser 可阻止 O2(-)的催化,这表明两个残基对于支持适当的酶活性都是必需的(Ryan 等人,J Biol Inorg Chem,2010)。在这项研究中,我们采用了一种组合的光谱和计算方法来表征三种 Cys-to-Ser(Cys --> Ser)突变体(C2S、C6S 和 C2S/C6S NiSOD)。这些突变体具有相似的电子吸收和磁圆二色光谱,表明它们具有几乎相同的活性位点几何和电子结构。这些光谱数据还表明,每个突变体中的 Ni(2+)离子采用高自旋(S = 1)构型,这是五或六配位配体环境的特征,而不是在天然酶中观察到的四配位 Ni(2+)中心的低自旋(S = 0)构型。在一系列五和六配位 C2S/C6S NiSOD 模型上进行的密度泛函理论计算的电子吸收和磁圆二色光谱数据分析表明,每个 Cys --> Ser 突变体的活性位点都具有一个基本的六配位 Ni(2+)中心,具有相当弱的轴向键合相互作用。探讨了导致 Cys --> Ser NiSOD 突变体缺乏催化活性的因素。

相似文献

1
Spectroscopic and computational investigation of three Cys-to-Ser mutants of nickel superoxide dismutase: insight into the roles played by the Cys2 and Cys6 active-site residues.镍超氧化物歧化酶三种半胱氨酸到丝氨酸突变体的光谱和计算研究:深入了解活性位点残基半胱氨酸 2 和半胱氨酸 6 所扮演的角色。
J Biol Inorg Chem. 2010 Jun;15(5):777-93. doi: 10.1007/s00775-010-0641-2. Epub 2010 Mar 24.
2
Nickel superoxide dismutase: structural and functional roles of Cys2 and Cys6.镍超氧化物歧化酶:Cys2 和 Cys6 的结构和功能作用。
J Biol Inorg Chem. 2010 Jun;15(5):795-807. doi: 10.1007/s00775-010-0645-y. Epub 2010 Mar 24.
3
Cysteinate protonation and water hydrogen bonding at the active-site of a nickel superoxide dismutase metallopeptide-based mimic: implications for the mechanism of superoxide reduction.半胱氨酸质子化和水的氢键在镍超氧化物歧化酶金属肽模拟物的活性部位:对超氧化物还原机制的影响。
J Am Chem Soc. 2014 Nov 12;136(45):16009-22. doi: 10.1021/ja5079514. Epub 2014 Nov 3.
4
Spectroscopic and computational studies of Ni superoxide dismutase: electronic structure contributions to enzymatic function.镍超氧化物歧化酶的光谱和计算研究:电子结构对酶功能的贡献。
J Am Chem Soc. 2005 Apr 20;127(15):5449-62. doi: 10.1021/ja042521i.
5
A Semisynthetic Strategy Leads to Alteration of the Backbone Amidate Ligand in the NiSOD Active Site.一种半合成策略导致镍超氧化物歧化酶活性位点中酰胺配体的骨架发生改变。
J Am Chem Soc. 2015 Jul 22;137(28):9044-52. doi: 10.1021/jacs.5b03629. Epub 2015 Jul 9.
6
Insight into the structure and mechanism of nickel-containing superoxide dismutase derived from peptide-based mimics.基于肽模拟物的镍超氧化物歧化酶结构与机制的研究进展。
Acc Chem Res. 2014 Aug 19;47(8):2332-41. doi: 10.1021/ar500060s. Epub 2014 May 13.
7
Accessing Ni(III)-thiolate versus Ni(II)-thiyl bonding in a family of Ni-N2S2 synthetic models of NiSOD.在一族镍超氧化物歧化酶(NiSOD)的镍-二氮二硫(Ni-N2S2)合成模型中探究镍(III)-硫醇盐与镍(II)-硫自由基键合情况。
Inorg Chem. 2015 Apr 20;54(8):3815-28. doi: 10.1021/ic503124f. Epub 2015 Apr 2.
8
The Role of Mixed Amine/Amide Ligation in Nickel Superoxide Dismutase.混合胺/酰胺连接在镍超氧化物歧化酶中的作用。
Inorg Chem. 2018 Oct 15;57(20):12521-12535. doi: 10.1021/acs.inorgchem.8b01499. Epub 2018 Oct 3.
9
Nickel superoxide dismutase structure and mechanism.镍超氧化物歧化酶的结构与机制。
Biochemistry. 2004 Jun 29;43(25):8038-47. doi: 10.1021/bi0496081.
10
Spectroscopic and computational studies of Ni3+ complexes with mixed S/N ligation: implications for the active site of nickel superoxide dismutase.含硫/氮混合配体的Ni3+配合物的光谱和计算研究:对镍超氧化物歧化酶活性位点的启示
Inorg Chem. 2007 Oct 15;46(21):8511-23. doi: 10.1021/ic061237k. Epub 2007 Feb 17.

引用本文的文献

1
The Role of Mixed Amine/Amide Ligation in Nickel Superoxide Dismutase.混合胺/酰胺连接在镍超氧化物歧化酶中的作用。
Inorg Chem. 2018 Oct 15;57(20):12521-12535. doi: 10.1021/acs.inorgchem.8b01499. Epub 2018 Oct 3.
2
Extraction of water-soluble polysaccharide and the antioxidant activity from Semen cassiae.决明子中水溶性多糖的提取及其抗氧化活性
J Food Drug Anal. 2014 Dec;22(4):492-499. doi: 10.1016/j.jfda.2014.01.027. Epub 2014 May 22.
3
Nickel superoxide dismutase: structural and functional roles of His1 and its H-bonding network.镍超氧化物歧化酶:组氨酸1的结构和功能作用及其氢键网络
Biochemistry. 2015 Feb 3;54(4):1016-27. doi: 10.1021/bi501258u. Epub 2015 Jan 21.
4
Superoxide dismutases and superoxide reductases.超氧化物歧化酶和超氧化物还原酶。
Chem Rev. 2014 Apr 9;114(7):3854-918. doi: 10.1021/cr4005296. Epub 2014 Apr 1.
5
Embedding the Ni-SOD mimetic Ni-NCC within a polypeptide sequence alters the specificity of the reaction pathway.将 Ni-SOD 模拟物 Ni-NCC 嵌入多肽序列中会改变反应途径的特异性。
Inorg Chem. 2013 Jan 7;52(1):77-83. doi: 10.1021/ic301175f. Epub 2012 Dec 10.
6
Controlling the chiral inversion reaction of the metallopeptide Ni-asparagine-cysteine-cysteine with dioxygen.控制金属肽 Ni-天冬酰胺-半胱氨酸-半胱氨酸与氧气的手性反转反应。
Inorg Chem. 2012 Sep 17;51(18):10055-63. doi: 10.1021/ic301717q. Epub 2012 Aug 28.
7
Dipeptide-based models of nickel superoxide dismutase: solvent effects highlight a critical role to Ni-S bonding and active site stabilization.基于二肽的镍超氧化物歧化酶模型:溶剂效应突出了 Ni-S 键合和活性位点稳定的关键作用。
Inorg Chem. 2011 Oct 17;50(20):10460-71. doi: 10.1021/ic2016462. Epub 2011 Sep 20.
8
Spectroscopic and computational studies of a series of high-spin Ni(II) thiolate complexes.系列高自旋 Ni(II)硫醇盐配合物的光谱和计算研究。
Inorg Chem. 2010 Jul 19;49(14):6535-44. doi: 10.1021/ic100362q.
9
Nickel superoxide dismutase: structural and functional roles of Cys2 and Cys6.镍超氧化物歧化酶:Cys2 和 Cys6 的结构和功能作用。
J Biol Inorg Chem. 2010 Jun;15(5):795-807. doi: 10.1007/s00775-010-0645-y. Epub 2010 Mar 24.

本文引用的文献

1
Role of conserved tyrosine residues in NiSOD catalysis: a case of convergent evolution.保守酪氨酸残基在镍超氧化物歧化酶催化中的作用:趋同进化的一个实例。
Biochemistry. 2009 Apr 21;48(15):3354-69. doi: 10.1021/bi802029t.
2
New insight into the mode of action of nickel superoxide dismutase by investigating metallopeptide substrate models.通过研究金属肽底物模型对镍超氧化物歧化酶的作用模式有了新的认识。
Chemistry. 2009;15(2):517-23. doi: 10.1002/chem.200800870.
3
A high-affinity metal-binding peptide from Escherichia coli HypB.一种来自大肠杆菌HypB的高亲和力金属结合肽。
J Am Chem Soc. 2008 Oct 29;130(43):14056-7. doi: 10.1021/ja8055003. Epub 2008 Oct 4.
4
Probing variable amine/amide ligation in Ni(II)N2S2 complexes using sulfur K-edge and nickel L-edge X-ray absorption spectroscopies: implications for the active site of nickel superoxide dismutase.利用硫 K 边和镍 L 边 X 射线吸收光谱探究 Ni(II)N2S2 配合物中的可变胺/酰胺连接:对镍超氧化物歧化酶活性位点的启示
Inorg Chem. 2008 Apr 7;47(7):2649-60. doi: 10.1021/ic7019878. Epub 2008 Mar 11.
5
Probing variable axial ligation in nickel superoxide dismutase utilizing metallopeptide-based models: insight into the superoxide disproportionation mechanism.利用基于金属肽的模型探究镍超氧化物歧化酶中的可变轴向连接:深入了解超氧化物歧化机制。
J Am Chem Soc. 2007 Nov 28;129(47):14605-18. doi: 10.1021/ja0731625. Epub 2007 Nov 7.
6
An experimental and computational study of sulfur-modified nucleophilicity in a dianionic NiN2S2 complex.二阴离子NiN₂S₂配合物中硫修饰亲核性的实验与计算研究
Inorg Chem. 2007 Sep 3;46(18):7536-44. doi: 10.1021/ic700878y. Epub 2007 Aug 8.
7
Sulfur K-edge XAS and DFT studies on NiII complexes with oxidized thiolate ligands: implications for the roles of oxidized thiolates in the active sites of Fe and Co nitrile hydratase.硫 K 边 X 射线吸收光谱和密度泛函理论研究含氧化硫醇盐配体的 NiII 配合物:氧化硫醇盐在铁和钴腈水合酶活性位点中的作用探讨
Inorg Chem. 2007 Jun 11;46(12):4989-96. doi: 10.1021/ic070244l. Epub 2007 May 15.
8
The influence of amine/amide versus bisamide coordination in nickel superoxide dismutase.镍超氧化物歧化酶中胺/酰胺与双酰胺配位的影响。
Inorg Chem. 2006 Dec 25;45(26):10552-66. doi: 10.1021/ic061156o.
9
Structural, spectroscopic, and magnetic study of bis(9,10-dihydro-9-oxo-10-acridineacetate)bis(imidazole)bis(methanol) nickel(II).双(9,10-二氢-9-氧代-10-吖啶乙酸酯)双(咪唑)双(甲醇)镍(II)的结构、光谱和磁性研究
Inorg Chem. 2006 Dec 25;45(26):10479-86. doi: 10.1021/ic060886t.
10
Electronic structure of four-coordinate C3v nickel(II) scorpionate complexes: investigation by high-frequency and -field electron paramagnetic resonance and electronic absorption spectroscopies.四配位C3v型镍(II)螯形配合物的电子结构:通过高频和高场电子顺磁共振及电子吸收光谱进行研究
Inorg Chem. 2006 Oct 30;45(22):8930-41. doi: 10.1021/ic060843c.