Institute for Molecular Medicine Finland, University of Helsinki, Helsinki, Finland.
BMC Med Genet. 2010 Mar 30;11:50. doi: 10.1186/1471-2350-11-50.
In search for genes predisposing to osteoarthritis (OA), several genome wide scans have provided evidence for linkage on 2q. In this study we targeted a 470 kb region on 2q11.2 presenting the locus with most evidence for linkage to severe OA of distal interphalangeal joints (DIP) in our genome wide scan families.
We genotyped 32 single nucleotide polymorphisms (SNPs) in this 470 kb region comprising six genes belonging to the interleukin 1 superfamily and monitored for association with individual SNPs and SNP haplotypes among severe familial hand OA cases (material extended from our previous linkage study; n = 134), unrelated end-stage bilateral primary knee OA cases (n = 113), and population based controls (n = 436).
Four SNPs in the IL1R1 gene, mapping to a 125 kb LD block, provided evidence for association with hand OA in family-based and case-control analysis, the strongest association being with SNP rs2287047 (p-value = 0.0009).
This study demonstrates an association between severe hand OA and IL1R1 gene. This gene represents a highly relevant biological candidate since it encodes protein that is a known modulator of inflammatory processes associated with joint destruction and resides within a locus providing consistent evidence for linkage to hand OA. As the observed association did not fully explain the linkage obtained in the previous study, it is plausible that also other variants in this genome region predispose to hand OA.
为了寻找易患骨关节炎(OA)的基因,几项全基因组扫描研究为 2q 上的连锁提供了证据。在这项研究中,我们针对 2q11.2 上的一个 470 kb 区域进行了研究,该区域是我们全基因组扫描家族中与远端指间关节(DIP)严重 OA 最相关的基因座。
我们对包含白细胞介素 1 超家族 6 个基因的 470 kb 区域中的 32 个单核苷酸多态性(SNP)进行了基因分型,并监测了个体 SNP 和 SNP 单倍型与严重家族性手部 OA 病例(来自我们之前的连锁研究的扩展材料;n=134)、无关联的终末期双侧原发性膝骨关节炎病例(n=113)和基于人群的对照组(n=436)之间的关联。
IL1R1 基因中的 4 个 SNP,映射到一个 125 kb 的 LD 块,在基于家族和病例对照的分析中提供了与手部 OA 相关的证据,最强的关联是与 SNP rs2287047(p 值=0.0009)。
本研究表明,严重手部 OA 与 IL1R1 基因之间存在关联。该基因代表了一个高度相关的生物学候选基因,因为它编码的蛋白是一种已知的炎症过程调节剂,与关节破坏有关,并且位于一个提供与手部 OA 一致连锁证据的基因座内。由于观察到的关联并未完全解释之前研究中获得的连锁,因此该基因组区域中的其他变体也可能易患手部 OA。