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用于人肿瘤组织定量蛋白质组学的超级 SILAC 混合物。

Super-SILAC mix for quantitative proteomics of human tumor tissue.

机构信息

Department of Proteomics and Signal Transduction, Max Planck Institute for Biochemistry, Martinsried, Germany.

出版信息

Nat Methods. 2010 May;7(5):383-5. doi: 10.1038/nmeth.1446. Epub 2010 Apr 4.

DOI:10.1038/nmeth.1446
PMID:20364148
Abstract

We describe a method to accurately quantify human tumor proteomes by combining a mixture of five stable-isotope labeling by amino acids in cell culture (SILAC)-labeled cell lines with human carcinoma tissue. This generated hundreds of thousands of isotopically labeled peptides in appropriate amounts to serve as internal standards for mass spectrometry-based analysis. By decoupling the labeling from the measurement, this super-SILAC method broadens the scope of SILAC-based proteomics.

摘要

我们描述了一种通过将五种稳定同位素标记的氨基酸在细胞培养中的细胞系混合物(SILAC)与人类癌组织相结合来准确定量人肿瘤蛋白质组的方法。 这产生了数十万种同位素标记的肽,以适量作为基于质谱分析的内标。 通过将标记与测量分离,这种超级 SILAC 方法拓宽了 SILAC 蛋白质组学的范围。

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Super-SILAC mix for quantitative proteomics of human tumor tissue.用于人肿瘤组织定量蛋白质组学的超级 SILAC 混合物。
Nat Methods. 2010 May;7(5):383-5. doi: 10.1038/nmeth.1446. Epub 2010 Apr 4.
2
Use of stable isotope labeling by amino acids in cell culture as a spike-in standard in quantitative proteomics.使用稳定同位素标记的氨基酸在细胞培养物中作为定量蛋白质组学的内标 spike-in 标准。
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3
Design and application of super-SILAC for proteome quantification.用于蛋白质组定量的超级稳定同位素标记氨基酸细胞培养技术的设计与应用
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Super-SILAC: current trends and future perspectives.超级稳定同位素标记氨基酸定量蛋白质组学技术(Super-SILAC):当前趋势与未来展望。
Expert Rev Proteomics. 2015 Feb;12(1):13-9. doi: 10.1586/14789450.2015.982538. Epub 2014 Nov 18.
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Relative protein quantification by isobaric SILAC with immonium ion splitting (ISIS).采用含亚铵离子裂解(ISIS)的等压稳定同位素标记氨基酸法(SILAC)进行相对蛋白质定量。
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Super-SILAC for tumors and tissues.用于肿瘤和组织的超级稳定同位素标记氨基酸定量蛋白质组学技术
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A Super-SILAC Strategy for the Accurate and Multiplexed Profiling of Histone Posttranslational Modifications.一种用于组蛋白翻译后修饰精确多重分析的超稳定同位素标记氨基酸细胞培养技术(Super-SILAC)策略
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Stable Isotope Labeling by Amino Acids in Cell Culture (SILAC) for Quantitative Proteomics.稳定同位素标记的氨基酸细胞培养 (SILAC) 用于定量蛋白质组学。
Adv Exp Med Biol. 2019;1140:531-539. doi: 10.1007/978-3-030-15950-4_31.
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Stable isotope labeling by amino acids in cell culture (SILAC) for quantitative proteomics.稳定同位素标记的氨基酸细胞培养(SILAC)用于定量蛋白质组学。
Adv Exp Med Biol. 2014;806:93-106. doi: 10.1007/978-3-319-06068-2_5.

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Benchmarking SILAC Proteomics Workflows and Data Analysis Platforms.基于稳定同位素标记氨基酸的细胞培养定量蛋白质组学工作流程及数据分析平台的基准测试
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SysQuan: Repurposing SILAC Mice for the Cost-Effective Absolute Quantitation of the Human Proteome.SysQuan:将稳定同位素标记氨基酸细胞培养(SILAC)小鼠重新用于人类蛋白质组的经济高效绝对定量分析。

本文引用的文献

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Combination of FASP and StageTip-based fractionation allows in-depth analysis of the hippocampal membrane proteome.FASP 和基于 StageTip 的分级组合允许深入分析海马膜蛋白质组。
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A literature review of molecular markers predictive of clinical response to cytotoxic chemotherapy in patients with breast cancer.关于乳腺癌患者对细胞毒性化疗临床反应预测性分子标志物的文献综述。
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SILAC-based quantification reveals modulation of the immunopeptidome in BRAF and MEK inhibitor sensitive and resistant melanoma cells.基于稳定同位素标记氨基酸的细胞培养定量分析揭示了BRAF和MEK抑制剂敏感及耐药黑色素瘤细胞中免疫肽组的调控。
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Advancements in Global Phosphoproteomics Profiling: Overcoming Challenges in Sensitivity and Quantification.全球磷酸化蛋白质组学分析的进展:克服灵敏度和定量方面的挑战
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Optimized and Robust Workflow for Quantifying the Canonical Histone Ubiquitination Marks H2AK119ub and H2BK120ub by LC-MS/MS.用于通过液相色谱-串联质谱法(LC-MS/MS)定量典型组蛋白泛素化标记H2AK119ub和H2BK120ub的优化且稳健的工作流程。
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Combining Data Independent Acquisition With Spike-In SILAC (DIA-SiS) Improves Proteome Coverage and Quantification.结合数据非依赖性采集与 SILAC(DIA-SiS)提高蛋白质组覆盖度和定量分析。
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Dual-species proteomics and targeted intervention of animal-pathogen interactions.动物-病原体相互作用的双物种蛋白质组学及靶向干预
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An optimized and robust workflow for quantifying the canonical histone ubiquitination marks H2AK119ub and H2BK120ub by LC-MS/MS.一种通过液相色谱-串联质谱法(LC-MS/MS)定量典型组蛋白泛素化标记H2AK119ub和H2BK120ub的优化且稳健的工作流程。
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蛋白质组分析的通用样本制备方法。
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Proteomic contributions to personalized cancer care.蛋白质组学对个性化癌症治疗的贡献。
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SILAC mouse for quantitative proteomics uncovers kindlin-3 as an essential factor for red blood cell function.用于定量蛋白质组学的稳定同位素标记氨基酸细胞培养小鼠模型揭示了纽带蛋白-3是红细胞功能的关键因子。
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A practical recipe for stable isotope labeling by amino acids in cell culture (SILAC).细胞培养中氨基酸稳定同位素标记(SILAC)的实用方法。
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Proteomics of breast cancer: principles and potential clinical applications.乳腺癌蛋白质组学:原理及潜在临床应用
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