Department of Molecular Biology and The Skaggs Institute for Chemical Biology, The Scripps Research Institute, La Jolla, CA 92037, USA.
Curr Opin Struct Biol. 2010 Jun;20(3):283-94. doi: 10.1016/j.sbi.2010.03.012. Epub 2010 May 1.
Changing macromolecular conformations and complexes are critical features of cellular networks, typified by DNA damage response pathways that are essential to life. These fluctuations enhance the specificity of macromolecular recognition and catalysis, and enable an integrated functioning of pathway components, ensuring efficiency while reducing off pathway reactions. Such dynamic complexes challenge classical detailed structural analyses, so their characterizations demand combining methods that provide detail with those that inform dynamics in solution. Small-angle X-ray scattering, electron microscopy, hydrogen-deuterium exchange and computation are complementing detailed structures from crystallography and NMR to provide comprehensive models for DNA damage searching, specificity, signaling, and repair. Here, we review new approaches and results on DNA damage responses that advance structural biology in the fourth dimension, connecting proteins to pathways.
构象变化和复合物的改变是细胞网络的关键特征,以 DNA 损伤反应途径为典型代表,该途径对生命至关重要。这些波动增强了大分子识别和催化的特异性,并使途径成分的整体功能成为可能,在提高效率的同时减少了非途径反应。这种动态复合物对经典的详细结构分析提出了挑战,因此需要将提供细节的方法与提供溶液动力学信息的方法相结合来对其进行表征。小角度 X 射线散射、电子显微镜、氘氢交换和计算方法正在补充晶体学和 NMR 提供的详细结构,为 DNA 损伤搜索、特异性、信号转导和修复提供全面的模型。在这里,我们综述了在连接蛋白质与途径的第四个维度——结构生物学方面取得进展的 DNA 损伤反应的新方法和新结果。