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基于接近度的可编程 DNA 纳米尺度装配线。

A proximity-based programmable DNA nanoscale assembly line.

机构信息

Department of Chemistry, New York University, New York, New York 10003, USA.

出版信息

Nature. 2010 May 13;465(7295):202-5. doi: 10.1038/nature09026.

Abstract

Our ability to synthesize nanometre-scale chemical species, such as nanoparticles with desired shapes and compositions, offers the exciting prospect of generating new functional materials and devices by combining them in a controlled fashion into larger structures. Self-assembly can achieve this task efficiently, but may be subject to thermodynamic and kinetic limitations: reactants, intermediates and products may collide with each other throughout the assembly time course to produce non-target species instead of target species. An alternative approach to nanoscale assembly uses information-containing molecules such as DNA to control interactions and thereby minimize unwanted cross-talk between different components. In principle, this method should allow the stepwise and programmed construction of target products by linking individually selected nanoscale components-much as an automobile is built on an assembly line. Here we demonstrate that a nanoscale assembly line can be realized by the judicious combination of three known DNA-based modules: a DNA origami tile that provides a framework and track for the assembly process, cassettes containing three independently controlled two-state DNA machines that serve as programmable cargo-donating devices and are attached in series to the tile, and a DNA walker that can move on the track from device to device and collect cargo. As the walker traverses the pathway prescribed by the origami tile track, it sequentially encounters the three DNA devices, each of which can be independently switched between an 'ON' state, allowing its cargo to be transferred to the walker, and an 'OFF' state, in which no transfer occurs. We use three different types of gold nanoparticle species as cargo and show that the experimental system does indeed allow the controlled fabrication of the eight different products that can be obtained with three two-state devices.

摘要

我们能够合成纳米级的化学物质,例如具有所需形状和组成的纳米粒子,这为通过将它们以可控的方式组合成更大的结构来生成新型功能材料和器件提供了令人兴奋的前景。自组装可以有效地完成这项任务,但可能受到热力学和动力学限制:反应物、中间体和产物可能在整个组装过程中相互碰撞,产生非目标物质而不是目标物质。纳米级组装的另一种方法是使用包含信息的分子(如 DNA)来控制相互作用,从而最大限度地减少不同组件之间的不必要的串扰。原则上,这种方法应该允许通过连接单独选择的纳米级组件逐步和编程构建目标产物——就像汽车在装配线上制造一样。在这里,我们证明了通过巧妙地结合三个已知的基于 DNA 的模块,可以实现纳米级装配线:一个 DNA 折纸瓦片,为组装过程提供了一个框架和轨道;包含三个独立控制的双稳态 DNA 机器的盒式组件,作为可编程货物捐赠装置,并串联连接到瓦片上;以及一个可以在轨道上从一个设备移动到另一个设备并收集货物的 DNA 行走器。当行走器穿过折纸瓦片轨道规定的路径时,它会依次遇到三个 DNA 设备,每个设备都可以在“ON”状态和“OFF”状态之间独立切换,允许其货物转移到行走器上,而在“OFF”状态下则不会发生转移。我们使用三种不同类型的金纳米颗粒作为货物,并表明实验系统确实允许使用三个双稳态设备控制地制造可以获得的 8 种不同产物。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fddb/2872101/36f5fab74cf5/nihms182085f1.jpg

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