• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

反硝化副球菌中的C1代谢:反硝化副球菌的遗传学

C1 metabolism in Paracoccus denitrificans: genetics of Paracoccus denitrificans.

作者信息

Harms N, van Spanning R J

机构信息

Department of Microbiology, Vrije Universiteit, Amsterdam, The Netherlands.

出版信息

J Bioenerg Biomembr. 1991 Apr;23(2):187-210. doi: 10.1007/BF00762217.

DOI:10.1007/BF00762217
PMID:2050654
Abstract

Paracoccus denitrificans is able to grow on the C1 compounds methanol and methylamine. These compounds are oxidized to formaldehyde which is subsequently oxidized via formate to carbon dioxide. Biomass is produced by carbon dioxide fixation via the ribulose biphosphate pathway. The first oxidation reaction is catalyzed by the enzymes methanol dehydrogenase and methylamine dehydrogenase, respectively. Both enzymes contain two different subunits in an alpha 2 beta 2 configuration. The genes encoding the subunits of methanol dehydrogenase (moxF and moxI) have been isolated and sequenced. They are located in one operon together with two other genes (moxJ and moxG) in the gene order moxFJGI. The function of the moxJ gene product is not yet known. MoxG codes for a cytochrome c551i, which functions as the electron acceptor of methanol dehydrogenase. Both methanol dehydrogenase and methylamine dehydrogenase contain PQQ as a cofactor. These so-called quinoproteins are able to catalyze redox reactions by one-electron steps. The reaction mechanism of this oxidation will be described. Electrons from the oxidation reaction are donated to the electron transport chain at the level of cytochrome c. P. denitrificans is able to synthesize at least 10 different c-type cytochromes. Five could be detected in the periplasm and five have been found in the cytoplasmic membrane. The membrane-bound cytochrome c1 and cytochrome c552 and the periplasmic-located cytochrome c550 are present under all tested growth conditions. The cytochromes c551i and c553i, present in the periplasm, are only induced in cells grown on methanol, methylamine, or choline. The other c-type cytochromes are mainly detected either under oxygen limited conditions or under anaerobic conditions with nitrate as electron acceptor or under both conditions. An overview including the induction pattern of all P. denitrificans c-type cytochromes will be given. The genes encoding cytochrome c1, cytochrome c550, cytochrome c551i, and cytochrome c553i have been isolated and sequenced. By using site-directed mutagenesis these genes were mutated in the genome. The mutants thus obtained were used to study electron transport during growth on C1 compounds. This electron transport has also been studied by determining electron transfer rates in in vitro experiments. The exact pathways, however, are not yet fully understood. Electrons from methanol dehydrogenase are donated to cytochrome c551i. Further electron transport is either via cytochrome c550 or cytochrome c553i to cytochrome aa3. However, direct electron transport from cytochrome c551i to the terminal oxidase might be possible as well.(ABSTRACT TRUNCATED AT 400 WORDS)

摘要

反硝化副球菌能够利用C1化合物甲醇和甲胺生长。这些化合物被氧化成甲醛,随后甲醛通过甲酸进一步氧化成二氧化碳。通过核酮糖二磷酸途径固定二氧化碳来产生生物质。第一个氧化反应分别由甲醇脱氢酶和甲胺脱氢酶催化。这两种酶均含有α2β2构型的两个不同亚基。编码甲醇脱氢酶亚基的基因(moxF和moxI)已被分离和测序。它们与另外两个基因(moxJ和moxG)位于一个操纵子中,基因顺序为moxFJGI。moxJ基因产物的功能尚不清楚。MoxG编码一种细胞色素c551i,它作为甲醇脱氢酶的电子受体。甲醇脱氢酶和甲胺脱氢酶都含有PQQ作为辅因子。这些所谓的醌蛋白能够通过单电子步骤催化氧化还原反应。将描述这种氧化的反应机制。氧化反应产生的电子在细胞色素c水平上被传递到电子传递链。反硝化副球菌能够合成至少10种不同的c型细胞色素。在周质中可检测到5种,在细胞质膜中发现了5种。膜结合的细胞色素c1和细胞色素c552以及位于周质的细胞色素c550在所有测试的生长条件下都存在。存在于周质中的细胞色素c551i和c553i仅在以甲醇、甲胺或胆碱为碳源生长的细胞中被诱导。其他c型细胞色素主要在氧气受限条件下或在以硝酸盐作为电子受体的厌氧条件下或在这两种条件下被检测到。将给出包括所有反硝化副球菌c型细胞色素诱导模式的概述。编码细胞色素c1、细胞色素c550、细胞色素c551i和细胞色素c553i的基因已被分离和测序。通过使用定点诱变,这些基因在基因组中发生了突变。由此获得的突变体用于研究在C1化合物上生长期间的电子传递。也通过在体外实验中测定电子转移速率来研究这种电子传递。然而,确切的途径尚未完全了解。来自甲醇脱氢酶的电子被传递给细胞色素c551i。进一步的电子传递要么通过细胞色素c550要么通过细胞色素c553i传递给细胞色素aa3。然而,从细胞色素c551i到末端氧化酶的直接电子传递也可能是可行的。(摘要截取自400字)

相似文献

1
C1 metabolism in Paracoccus denitrificans: genetics of Paracoccus denitrificans.反硝化副球菌中的C1代谢:反硝化副球菌的遗传学
J Bioenerg Biomembr. 1991 Apr;23(2):187-210. doi: 10.1007/BF00762217.
2
Isolation and characterization of the moxJ, moxG, moxI, and moxR genes of Paracoccus denitrificans: inactivation of moxJ, moxG, and moxR and the resultant effect on methylotrophic growth.反硝化副球菌moxJ、moxG、moxI和moxR基因的分离与特性分析:moxJ、moxG和moxR的失活及其对甲基营养生长的影响
J Bacteriol. 1991 Nov;173(21):6948-61. doi: 10.1128/jb.173.21.6948-6961.1991.
3
Characterization of two inducible periplasmic c-type cytochromes from Paracoccus denitrificans.反硝化副球菌中两种可诱导的周质c型细胞色素的特性分析。
J Biol Chem. 1986 Jul 5;261(19):8577-80.
4
A method for introduction of unmarked mutations in the genome of Paracoccus denitrificans: construction of strains with multiple mutations in the genes encoding periplasmic cytochromes c550, c551i, and c553i.一种在反硝化副球菌基因组中引入无标记突变的方法:构建编码周质细胞色素c550、c551i和c553i的基因中具有多个突变的菌株。
J Bacteriol. 1991 Nov;173(21):6962-70. doi: 10.1128/jb.173.21.6962-6970.1991.
5
The oxidation of methylamine in Paracoccus denitrificans.反硝化副球菌中甲胺的氧化作用。
Eur J Biochem. 1995 Apr 1;229(1):148-54. doi: 10.1111/j.1432-1033.1995.0148l.x.
6
Isolation, sequencing, and mutagenesis of the gene encoding cytochrome c553i of Paracoccus denitrificans and characterization of the mutant strain.反硝化副球菌细胞色素c553i编码基因的分离、测序、诱变及突变株的特性分析
J Bacteriol. 1991 Nov;173(21):6971-9. doi: 10.1128/jb.173.21.6971-6979.1991.
7
Reversed electron transfer through the bc1 complex enables a cytochrome c oxidase mutant (delta aa3/cbb3) of Paracoccus denitrificans to grow on methylamine.通过bc1复合物的反向电子传递使反硝化副球菌的一种细胞色素c氧化酶突变体(δaa3/cbb3)能够利用甲胺生长。
FEBS Lett. 1995 Sep 11;371(3):267-70. doi: 10.1016/0014-5793(95)00900-t.
8
Aerobic and anaerobic growth of Paracoccus denitrificans on methanol.反硝化副球菌在甲醇上的需氧和厌氧生长
Arch Microbiol. 1978 Oct 4;119(1):91-7. doi: 10.1007/BF00407934.
9
Metabolic regulation including anaerobic metabolism in Paracoccus denitrificans.反硝化副球菌中的代谢调控,包括无氧代谢。
J Bioenerg Biomembr. 1991 Apr;23(2):163-85. doi: 10.1007/BF00762216.
10
Electron transfer kinetics between soluble modules of Paracoccus denitrificans cytochrome c1 and its physiological redox partners.反硝化副球菌细胞色素c1的可溶性模块与其生理氧化还原伙伴之间的电子转移动力学。
Biochim Biophys Acta. 2008 Mar;1777(3):250-9. doi: 10.1016/j.bbabio.2008.01.003. Epub 2008 Jan 16.

引用本文的文献

1
Choline degradation in : identification of sources of formaldehyde.胆碱降解物:甲醛来源的鉴定。
J Bacteriol. 2024 Apr 18;206(4):e0008124. doi: 10.1128/jb.00081-24. Epub 2024 Mar 19.
2
Genomic profiling and characteristics of a C1 degrading heterotrophic fresh-water bacterium Paracoccus sp. strain DMF.C1 降解异养淡水菌 Paracoccus sp. 菌株 DMF 的基因组分析和特性。
Arch Microbiol. 2023 Nov 28;206(1):6. doi: 10.1007/s00203-023-03729-z.
3
Methanotrophy by a Mycobacterium species that dominates a cave microbial ecosystem.

本文引用的文献

1
Isolation and analysis of the genes for cytochrome c oxidase in Paracoccus denitrificans.分离和分析 Paracoccus denitrificans 细胞色素 c 氧化酶的基因。
EMBO J. 1987 Sep;6(9):2825-33. doi: 10.1002/j.1460-2075.1987.tb02579.x.
2
Organization of Genes Required for the Oxidation of Methanol to Formaldehyde in Three Type II Methylotrophs.三类 II 型甲醇营养型微生物氧化甲醇生成甲醛所需基因的组织。
Appl Environ Microbiol. 1989 Dec;55(12):3124-30. doi: 10.1128/aem.55.12.3124-3130.1989.
3
Regulation of enzymes associated with C-1 metabolism in three facultative methylotrophs.
一种在洞穴微生物生态系统中占主导地位的分枝杆菌的甲烷营养作用。
Nat Microbiol. 2022 Dec;7(12):2089-2100. doi: 10.1038/s41564-022-01252-3. Epub 2022 Nov 3.
4
High biodiversity in a benzene-degrading nitrate-reducing culture is sustained by a few primary consumers.高生物多样性在苯降解硝酸盐还原培养中由少数初级消费者维持。
Commun Biol. 2021 May 5;4(1):530. doi: 10.1038/s42003-021-01948-y.
5
Impact of plants on the diversity and activity of methylotrophs in soil.植物对土壤中甲基营养菌多样性和活性的影响。
Microbiome. 2020 Mar 10;8(1):31. doi: 10.1186/s40168-020-00801-4.
6
Two-Component System RhpRS Switches between Virulence and Metabolism by Tuning Phosphorylation State and Sensing Nutritional Conditions.双组分系统 RhpRS 通过调节磷酸化状态和感知营养条件在毒力和代谢之间转换。
mBio. 2019 Mar 19;10(2):e02838-18. doi: 10.1128/mBio.02838-18.
7
Surface residues dynamically organize water bridges to enhance electron transfer between proteins.表面残留物动态组织水桥以增强蛋白质之间的电子转移。
Proc Natl Acad Sci U S A. 2010 Jun 29;107(26):11799-804. doi: 10.1073/pnas.0914457107. Epub 2010 Jun 14.
8
Identification of proteins involved in formaldehyde metabolism by Rhodobacter sphaeroides.球形红杆菌中参与甲醛代谢的蛋白质的鉴定
Microbiology (Reading). 2008 Jan;154(Pt 1):296-305. doi: 10.1099/mic.0.2007/011346-0.
9
Cytochromes c(550), c(552), and c(1) in the electron transport network of Paracoccus denitrificans: redundant or subtly different in function?反硝化副球菌电子传递网络中的细胞色素c(550)、c(552)和c(1):功能上是冗余还是存在细微差异?
J Bacteriol. 2001 Dec;183(24):7017-26. doi: 10.1128/JB.183.24.7017-7026.2001.
10
Molecular genetics of the genus Paracoccus: metabolically versatile bacteria with bioenergetic flexibility.副球菌属的分子遗传学:具有生物能量灵活性的代谢多功能细菌。
Microbiol Mol Biol Rev. 1998 Dec;62(4):1046-78. doi: 10.1128/MMBR.62.4.1046-1078.1998.
三种兼性甲基营养菌中与 C-1 代谢相关的酶的调节。
Appl Environ Microbiol. 1980 Aug;40(2):370-5. doi: 10.1128/aem.40.2.370-375.1980.
4
Purification and properties of Paracoccus denitrificans Azurin.反硝化副球菌蓝铜蛋白的纯化及性质
Arch Biochem Biophys. 1980 Feb;199(2):465-72. doi: 10.1016/0003-9861(80)90303-3.
5
Broad host range DNA cloning system for gram-negative bacteria: construction of a gene bank of Rhizobium meliloti.用于革兰氏阴性菌的广宿主范围DNA克隆系统:苜蓿根瘤菌基因文库的构建
Proc Natl Acad Sci U S A. 1980 Dec;77(12):7347-51. doi: 10.1073/pnas.77.12.7347.
6
Amino acid sequence studies of the light subunit of methylamine dehydrogenase from Pseudomonas AM1: existence of two residues binding the prosthetic group.来自假单胞菌AM1的甲胺脱氢酶轻亚基的氨基酸序列研究:存在两个结合辅基的残基。
J Biochem. 1983 Jan;93(1):107-19. doi: 10.1093/oxfordjournals.jbchem.a134144.
7
NAD-dependent, PQQ-containing methanol dehydrogenase: a bacterial dehydrogenase in a multienzyme complex.依赖烟酰胺腺嘌呤二核苷酸(NAD)、含吡咯喹啉醌(PQQ)的甲醇脱氢酶:多酶复合物中的一种细菌脱氢酶
FEBS Lett. 1984 Mar 26;168(2):217-21. doi: 10.1016/0014-5793(84)80249-5.
8
Purification and characterization of the cytochrome c oxidase from Rhodopseudomonas sphaeroides.球形红假单胞菌细胞色素c氧化酶的纯化与特性分析
Eur J Biochem. 1982 Jun 15;125(1):189-95. doi: 10.1111/j.1432-1033.1982.tb06667.x.
9
A reassessment of the structure of Paracoccus cytochrome c-550.副球菌细胞色素c-550结构的重新评估。
J Mol Biol. 1981 Apr 5;147(2):351-6. doi: 10.1016/0022-2836(81)90445-9.
10
Two cytochromes c of Methylomonas J.甲基单胞菌J的两种细胞色素c
J Biochem. 1981 Jul;90(1):215-24. doi: 10.1093/oxfordjournals.jbchem.a133452.