Laboratory for Optical and Computational Instrumentation, Department of Molecular Biology, Graduate School, University of Wisconsin at Madison, Madison, WI 53711, USA.
J Cell Biol. 2010 May 31;189(5):777-82. doi: 10.1083/jcb.201004104.
Data sharing is important in the biological sciences to prevent duplication of effort, to promote scientific integrity, and to facilitate and disseminate scientific discovery. Sharing requires centralized repositories, and submission to and utility of these resources require common data formats. This is particularly challenging for multidimensional microscopy image data, which are acquired from a variety of platforms with a myriad of proprietary file formats (PFFs). In this paper, we describe an open standard format that we have developed for microscopy image data. We call on the community to use open image data standards and to insist that all imaging platforms support these file formats. This will build the foundation for an open image data repository.
数据共享对于生物科学非常重要,可以避免重复劳动,促进科学诚信,并有助于科学发现的传播。共享需要集中式存储库,而提交和利用这些资源需要通用的数据格式。对于多维显微镜图像数据来说,这尤其具有挑战性,因为这些数据是由各种平台使用各种专有的文件格式(PFF)采集的。在本文中,我们描述了一种我们为显微镜图像数据开发的开放标准格式。我们呼吁社区使用开放的图像数据标准,并坚持要求所有成像平台都支持这些文件格式。这将为开放的图像数据存储库奠定基础。