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双分子层混合物的原子模拟。

Atomistic simulations of bicelle mixtures.

机构信息

Department of Chemistry, Emory University, Atlanta, Georgia, USA.

出版信息

Biophys J. 2010 Jun 16;98(12):2895-903. doi: 10.1016/j.bpj.2010.03.042.

Abstract

Mixtures of long- and short-tail phosphatidylcholine lipids are known to self-assemble into a variety of aggregates combining flat bilayerlike and curved micellelike features, commonly called bicelles. Atomistic simulations of bilayer ribbons and perforated bilayers containing dimyristoylphosphatidylcholine (DMPC, di-C(14) tails) and dihexanoylphosphatidylcholine (DHPC, di-C(6) tails) have been carried out to investigate the partitioning of these components between flat and curved microenvironments and the stabilization of the bilayer edge by DHPC. To approach equilibrium partitioning of lipids on an achievable simulation timescale, configuration-bias Monte Carlo mutation moves were used to allow individual lipids to change tail length within a semigrand-canonical ensemble. Since acceptance probabilities for direct transitions between DMPC and DHPC were negligible, a third component with intermediate tail length (didecanoylphosphatidylcholine, di-C(10) tails) was included at a low concentration to serve as an intermediate for transitions between DMPC and DHPC. Strong enrichment of DHPC is seen at ribbon and pore edges, with an excess linear density of approximately 3 nm(-1). The simulation model yields estimates for the onset of edge stability with increasing bilayer DHPC content between 5% and 15% DHPC at 300 K and between 7% and 17% DHPC at 323 K, higher than experimental estimates. Local structure and composition at points of close contact between pores suggest a possible mechanism for effective attractions between pores, providing a rationalization for the tendency of bicelle mixtures to aggregate into perforated vesicles and perforated sheets.

摘要

长链和短链磷脂酰胆碱脂质混合物已知可以自组装成各种结合平面双层状和弯曲胶束状特征的聚集体,通常称为双体。已经对含有二肉豆蔻酰磷脂酰胆碱(DMPC,双 C(14)尾)和二己酰基磷脂酰胆碱(DHPC,双 C(6)尾)的双层带和穿孔双层的原子模拟进行了研究,以研究这些成分在平面和弯曲微环境之间的分配以及 DHPC 对双层边缘的稳定作用。为了在可实现的模拟时间尺度上接近平衡分配脂质,使用构象偏差蒙特卡罗突变移动来允许单个脂质在半 grand 正则 ensemble 中改变尾长。由于 DMPC 和 DHPC 之间直接跃迁的接受概率可以忽略不计,因此在低浓度下加入具有中间尾长的第三种成分(二癸酰基磷脂酰胆碱,双 C(10)尾),作为 DMPC 和 DHPC 之间跃迁的中间物。在带和孔边缘观察到 DHPC 的强烈富集,其过量线性密度约为 3nm(-1)。模拟模型在 300 K 时,在 5%至 15%DHPC 的双层 DHPC 含量之间,在 323 K 时,在 7%至 17%DHPC 的双层 DHPC 含量之间,预测出边缘稳定性随双层 DHPC 含量增加而开始的估计值高于实验估计值。在孔之间紧密接触点的局部结构和组成表明了孔之间有效吸引力的可能机制,为双体混合物倾向于聚集形成穿孔囊泡和穿孔片提供了合理化解释。

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Atomistic simulations of bicelle mixtures.双分子层混合物的原子模拟。
Biophys J. 2010 Jun 16;98(12):2895-903. doi: 10.1016/j.bpj.2010.03.042.

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