Center for Integrative Genomics, University of Lausanne, CH-1015 Lausanne, Switzerland.
Genome Res. 2010 Oct;20(10):1313-26. doi: 10.1101/gr.101386.109. Epub 2010 Jul 22.
Ever since the pre-molecular era, the birth of new genes with novel functions has been considered to be a major contributor to adaptive evolutionary innovation. Here, I review the origin and evolution of new genes and their functions in eukaryotes, an area of research that has made rapid progress in the past decade thanks to the genomics revolution. Indeed, recent work has provided initial whole-genome views of the different types of new genes for a large number of different organisms. The array of mechanisms underlying the origin of new genes is compelling, extending way beyond the traditionally well-studied source of gene duplication. Thus, it was shown that novel genes also regularly arose from messenger RNAs of ancestral genes, protein-coding genes metamorphosed into new RNA genes, genomic parasites were co-opted as new genes, and that both protein and RNA genes were composed from scratch (i.e., from previously nonfunctional sequences). These mechanisms then also contributed to the formation of numerous novel chimeric gene structures. Detailed functional investigations uncovered different evolutionary pathways that led to the emergence of novel functions from these newly minted sequences and, with respect to animals, attributed a potentially important role to one specific tissue--the testis--in the process of gene birth. Remarkably, these studies also demonstrated that novel genes of the various types significantly impacted the evolution of cellular, physiological, morphological, behavioral, and reproductive phenotypic traits. Consequently, it is now firmly established that new genes have indeed been major contributors to the origin of adaptive evolutionary novelties.
自从分子前时代以来,具有新功能的新基因的诞生一直被认为是适应性进化创新的主要贡献者。在这里,我回顾了真核生物中新基因的起源和进化及其功能,在过去十年中,得益于基因组学革命,这一研究领域取得了快速进展。事实上,最近的工作为大量不同生物体的新基因的不同类型提供了最初的全基因组视图。新基因起源的机制多种多样,远远超出了传统上研究充分的基因复制来源。因此,研究表明,新基因也经常从祖先基因的信使 RNA 中产生,蛋白编码基因演变成新的 RNA 基因,基因组寄生虫被篡夺为新基因,蛋白和 RNA 基因都是从头开始组成的(即,从以前无功能的序列中)。这些机制也促成了大量新的嵌合基因结构的形成。详细的功能研究揭示了不同的进化途径,这些途径导致这些新生成的序列产生新的功能,并且就动物而言,特定组织——睾丸——在基因诞生过程中发挥了潜在的重要作用。值得注意的是,这些研究还表明,各种类型的新基因显著影响了细胞、生理、形态、行为和生殖表型特征的进化。因此,现在可以肯定的是,新基因确实是适应性进化新事物起源的主要贡献者。