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通过 X 射线吸收光谱研究蛋白质构象及与盐的相互作用。

Investigation of protein conformation and interactions with salts via X-ray absorption spectroscopy.

机构信息

Department of Chemistry, University of California, Berkeley, CA 94720, USA.

出版信息

Proc Natl Acad Sci U S A. 2010 Aug 10;107(32):14008-13. doi: 10.1073/pnas.1006435107. Epub 2010 Jul 26.

Abstract

Nitrogen K-edge spectra of aqueous triglycine were measured using liquid microjets, and the effects of Hofmeister-active salts on the spectra were observed. Spectra simulated using density functional theory, sampled from room temperature classical molecular dynamics trajectories, capture all major features in the measured spectra. The spectrum of triglycine in water is quite similar to that in the presence of chaotropic sodium bromide (and other halides), which raises the solubility of proteins. However, a new feature is found when kosmotropic Na(2)SO(3), which lowers solubility, is present; this feature results from excitations of the nitrogen atom in the terminal amino group of triglycine. Both direct interactions between this salt and the protonated amino terminus, as well as corresponding changes in the conformational dynamics of the system, contribute to this new feature. These molecular measurements support a different mechanism for the Hofmeister effect than has previously been suggested based on thermodynamic measurements. It is also shown that near edge X-ray absorption fine structure (NEXAFS) is sensitive to strong direct interaction between certain salts and charged peptides. However, by investigating the sensitivity of NEXAFS to the extreme structural differences between model beta-sheets and alpha-helices, we conclude that this technique is relatively insensitive to secondary structure of peptides and proteins.

摘要

采用液体微射流技术测量了水合三甘氨酸的氮 K 边谱,并观察了霍夫迈斯特活性盐对谱的影响。使用密度泛函理论模拟的、从室温经典分子动力学轨迹中采样的谱图,捕获了测量谱图中的所有主要特征。三甘氨酸在水中的谱图与具有溶致性的溴化钠(和其他卤化物)存在时的谱图非常相似,这提高了蛋白质的溶解度。然而,当具有反溶致性的 Na2SO3 存在时,会发现一个新的特征;该特征源自三甘氨酸末端氨基氮原子的激发。这种盐与质子化氨基末端之间的直接相互作用以及系统构象动力学的相应变化都导致了这个新特征。这些分子测量结果支持了霍夫迈斯特效应的不同机制,而这一机制与之前基于热力学测量的机制不同。还表明,近边 X 射线吸收精细结构(NEXAFS)对某些盐与带电肽之间的强直接相互作用敏感。然而,通过研究 NEXAFS 对模型β-折叠和α-螺旋之间极端结构差异的敏感性,我们得出结论,该技术对肽和蛋白质的二级结构相对不敏感。

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