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本文引用的文献

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Identification and characterization of the tungsten-containing class of benzoyl-coenzyme A reductases.含钨类苯甲酰辅酶A还原酶的鉴定与表征
Proc Natl Acad Sci U S A. 2009 Oct 20;106(42):17687-92. doi: 10.1073/pnas.0905073106. Epub 2009 Oct 6.
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Syntrophic growth on formate: a new microbial niche in anoxic environments.以甲酸盐为底物的互营生长:缺氧环境中的一个新微生物生态位。
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Methanogenic archaea: ecologically relevant differences in energy conservation.产甲烷古菌:能量守恒方面与生态相关的差异
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4
Syntrophorhabdus aromaticivorans gen. nov., sp. nov., the first cultured anaerobe capable of degrading phenol to acetate in obligate syntrophic associations with a hydrogenotrophic methanogen.芳香食互营杆菌属新属,新种,首个能在与氢营养型产甲烷菌的专性互营共生关系中将苯酚降解为乙酸盐的培养厌氧微生物。
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Genome sequence of Thermofilum pendens reveals an exceptional loss of biosynthetic pathways without genome reduction.嗜热栖热放线菌的基因组序列揭示了生物合成途径的异常缺失且基因组未发生缩减。
J Bacteriol. 2008 Apr;190(8):2957-65. doi: 10.1128/JB.01949-07. Epub 2008 Feb 8.
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"Candidatus Cloacamonas acidaminovorans": genome sequence reconstruction provides a first glimpse of a new bacterial division.“食氨基酸候选阴沟单胞菌”:基因组序列重建首次揭示了一个新的细菌门类。
J Bacteriol. 2008 Apr;190(7):2572-9. doi: 10.1128/JB.01248-07. Epub 2008 Feb 1.
7
Methanolinea tarda gen. nov., sp. nov., a methane-producing archaeon isolated from a methanogenic digester sludge.迟缓甲醇甲烷菌,新属,新种,一种从产甲烷消化池污泥中分离出的产甲烷古菌。
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Function, structure, and evolution of the RubisCO-like proteins and their RubisCO homologs.1,5-二磷酸核酮糖羧化酶/加氧酶(RubisCO)样蛋白及其RubisCO同源物的功能、结构与进化
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9
Genomic and microarray analysis of aromatics degradation in Geobacter metallireducens and comparison to a Geobacter isolate from a contaminated field site.嗜金属还原地杆菌中芳烃降解的基因组和微阵列分析以及与来自污染现场的一株地杆菌分离株的比较。
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在一个可降解对苯二甲酸的产甲烷共生物中存在多种共生关系。

Multiple syntrophic interactions in a terephthalate-degrading methanogenic consortium.

机构信息

Joint Genome Institute, Lawrence National Berkeley Laboratory, Walnut Creek, CA, USA.

出版信息

ISME J. 2011 Jan;5(1):122-30. doi: 10.1038/ismej.2010.125. Epub 2010 Aug 5.

DOI:10.1038/ismej.2010.125
PMID:20686509
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC3105669/
Abstract

Terephthalate (TA) is one of the top 50 chemicals produced worldwide. Its production results in a TA-containing wastewater that is treated by anaerobic processes through a poorly understood methanogenic syntrophy. Using metagenomics, we characterized the methanogenic consortium inside a hyper-mesophilic (that is, between mesophilic and thermophilic), TA-degrading bioreactor. We identified genes belonging to dominant Pelotomaculum species presumably involved in TA degradation through decarboxylation, dearomatization, and modified β-oxidation to H(2)/CO(2) and acetate. These intermediates are converted to CH(4)/CO(2) by three novel hyper-mesophilic methanogens. Additional secondary syntrophic interactions were predicted in Thermotogae, Syntrophus and candidate phyla OP5 and WWE1 populations. The OP5 encodes genes capable of anaerobic autotrophic butyrate production and Thermotogae, Syntrophus and WWE1 have the genetic potential to oxidize butyrate to CO(2)/H(2) and acetate. These observations suggest that the TA-degrading consortium consists of additional syntrophic interactions beyond the standard H(2)-producing syntroph-methanogen partnership that may serve to improve community stability.

摘要

对苯二甲酸(TA)是全球产量排名前 50 的化学物质之一。其生产过程会产生含有 TA 的废水,这些废水通过厌氧工艺进行处理,其中涉及一种甲烷生成菌的共生作用,但人们对此了解甚少。本研究采用宏基因组学方法,对嗜高温(即中温与高温之间)、可降解 TA 的生物反应器内的产甲烷菌群进行了特征描述。研究人员鉴定出了属于 Pelotomaculum 优势种的基因,这些基因可能通过脱羧作用、去芳构化作用以及经改良的β-氧化作用将 TA 降解为 H(2)/CO(2)和乙酸盐。三种新型嗜中温产甲烷菌可将这些中间体进一步转化为 CH(4)/CO(2)。Thermotogae、Syntrophus 和候选门 OP5 和 WWE1 种群中还预测存在其他次级共生相互作用。OP5 编码能够进行厌氧自养丁酸生产的基因,Thermotogae、Syntrophus 和 WWE1 具有将丁酸氧化为 CO(2)/H(2)和乙酸盐的遗传潜力。这些观察结果表明,TA 降解菌群除了标准的产 H(2)产甲烷菌共生关系外,还存在其他共生相互作用,这可能有助于提高群落稳定性。