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“食氨基酸候选阴沟单胞菌”:基因组序列重建首次揭示了一个新的细菌门类。

"Candidatus Cloacamonas acidaminovorans": genome sequence reconstruction provides a first glimpse of a new bacterial division.

作者信息

Pelletier Eric, Kreimeyer Annett, Bocs Stéphanie, Rouy Zoé, Gyapay Gábor, Chouari Rakia, Rivière Delphine, Ganesan Akila, Daegelen Patrick, Sghir Abdelghani, Cohen Georges N, Médigue Claudine, Weissenbach Jean, Le Paslier Denis

机构信息

CEA/Genoscope, CNRS-UMR8030, Université d'Evry Val d'Essonne, 91057 Evry, France.

出版信息

J Bacteriol. 2008 Apr;190(7):2572-9. doi: 10.1128/JB.01248-07. Epub 2008 Feb 1.

Abstract

Many microorganisms live in anaerobic environments. Most of these microorganisms have not yet been cultivated. Here, we present, from a metagenomic analysis of an anaerobic digester of a municipal wastewater treatment plant, a reconstruction of the complete genome of a bacterium belonging to the WWE1 candidate division. In silico proteome analysis indicated that this bacterium might derive most of its carbon and energy from the fermentation of amino acids, and hence, it was provisionally classified as "Candidatus Cloacamonas acidaminovorans." "Candidatus Cloacamonas acidaminovorans" is probably a syntrophic bacterium that is present in many anaerobic digesters. This report highlights how environmental sequence data might provide genomic and functional information about a new bacterial clade whose members are involved in anaerobic digestion.

摘要

许多微生物生活在厌氧环境中。这些微生物中的大多数尚未被培养出来。在此,我们通过对一个城市污水处理厂厌氧消化器的宏基因组分析,展示了属于WWE1候选门类的一种细菌的完整基因组重建。计算机蛋白质组分析表明,这种细菌可能从氨基酸发酵中获取大部分碳和能量,因此,它被暂时归类为“嗜酸隐杆菌(Candidatus Cloacamonas acidaminovorans)”。嗜酸隐杆菌可能是一种共生细菌,存在于许多厌氧消化器中。本报告强调了环境序列数据如何能够提供有关一个新细菌类群的基因组和功能信息,该类群的成员参与厌氧消化过程。

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