• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

酵母蛋白质组学和蛋白质微阵列。

Yeast proteomics and protein microarrays.

机构信息

Department of Genetics, Stanford University School of Medicine, Stanford, CA 94305, USA.

出版信息

J Proteomics. 2010 Oct 10;73(11):2147-57. doi: 10.1016/j.jprot.2010.08.003. Epub 2010 Aug 20.

DOI:10.1016/j.jprot.2010.08.003
PMID:20728591
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC2949546/
Abstract

Our understanding of biological processes as well as human diseases has improved greatly thanks to studies on model organisms such as yeast. The power of scientific approaches with yeast lies in its relatively simple genome, its facile classical and molecular genetics, as well as the evolutionary conservation of many basic biological mechanisms. However, even in this simple model organism, systems biology studies, especially proteomic studies had been an intimidating task. During the past decade, powerful high-throughput technologies in proteomic research have been developed for yeast including protein microarray technology. The protein microarray technology allows the interrogation of protein-protein, protein-DNA, protein-small molecule interaction networks as well as post-translational modification networks in a large-scale, high-throughput manner. With this technology, many groundbreaking findings have been established in studies with the budding yeast Saccharomyces cerevisiae, most of which could have been unachievable with traditional approaches. Discovery of these networks has profound impact on explicating biological processes with a proteomic point of view, which may lead to a better understanding of normal biological phenomena as well as various human diseases.

摘要

由于对酵母等模式生物的研究,我们对生物过程和人类疾病的理解有了很大的提高。酵母之所以具有科学研究的强大力量,在于其相对简单的基因组、简便的经典和分子遗传学,以及许多基本生物学机制的进化保守性。然而,即使在这个简单的模式生物中,系统生物学研究,特别是蛋白质组学研究,一直是一项艰巨的任务。在过去的十年中,针对酵母的蛋白质组学研究中已经开发出了许多强大的高通量技术,包括蛋白质微阵列技术。蛋白质微阵列技术允许以大规模、高通量的方式检测蛋白质-蛋白质、蛋白质-DNA、蛋白质-小分子相互作用网络以及翻译后修饰网络。利用这项技术,在对出芽酵母酿酒酵母的研究中取得了许多突破性的发现,其中大部分发现是传统方法无法实现的。这些网络的发现对从蛋白质组学角度阐释生物过程产生了深远的影响,这可能有助于更好地理解正常的生物学现象以及各种人类疾病。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c7d9/7102695/c46499bf54bb/gr4_lrg.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c7d9/7102695/55efd18c940c/fx1_lrg.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c7d9/7102695/beffc7c1a950/gr1_lrg.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c7d9/7102695/af6eb91abf35/gr2_lrg.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c7d9/7102695/4cf497250f0b/gr3_lrg.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c7d9/7102695/c46499bf54bb/gr4_lrg.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c7d9/7102695/55efd18c940c/fx1_lrg.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c7d9/7102695/beffc7c1a950/gr1_lrg.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c7d9/7102695/af6eb91abf35/gr2_lrg.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c7d9/7102695/4cf497250f0b/gr3_lrg.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c7d9/7102695/c46499bf54bb/gr4_lrg.jpg

相似文献

1
Yeast proteomics and protein microarrays.酵母蛋白质组学和蛋白质微阵列。
J Proteomics. 2010 Oct 10;73(11):2147-57. doi: 10.1016/j.jprot.2010.08.003. Epub 2010 Aug 20.
2
Using functional proteome microarrays to study protein lysine acetylation.利用功能蛋白质组芯片研究蛋白质赖氨酸乙酰化。
Methods Mol Biol. 2013;981:151-65. doi: 10.1007/978-1-62703-305-3_12.
3
Functional protein microarray technology.功能蛋白质微阵列技术。
Wiley Interdiscip Rev Syst Biol Med. 2011 May-Jun;3(3):255-68. doi: 10.1002/wsbm.118. Epub 2010 Sep 24.
4
Protein biochips: A new and versatile platform technology for molecular medicine.蛋白质生物芯片:分子医学的一种新型通用平台技术。
Drug Discov Today. 2005 Jun 1;10(11):789-94. doi: 10.1016/S1359-6446(05)03449-5.
5
Yeast-based functional genomics and proteomics technologies: the first 15 years and beyond.基于酵母的功能基因组学和蛋白质组学技术:头15年及以后。
Biotechniques. 2006 May;40(5):625-44. doi: 10.2144/000112151.
6
A decade of Nucleic Acid Programmable Protein Arrays (NAPPA) availability: News, actors, progress, prospects and access.十年来核酸可编程蛋白阵列(NAPPA)的应用:新闻、参与者、进展、前景和获取途径。
J Proteomics. 2019 Apr 30;198:27-35. doi: 10.1016/j.jprot.2018.12.007. Epub 2018 Dec 12.
7
Emerging technologies in yeast genomics.酵母基因组学中的新兴技术。
Nat Rev Genet. 2001 Apr;2(4):302-12. doi: 10.1038/35066084.
8
Yeast Proteins: Proteomics, Extraction, Modification, Functional Characterization, and Structure: A Review.酵母蛋白:蛋白质组学、提取、修饰、功能表征和结构:综述。
J Agric Food Chem. 2024 Aug 28;72(34):18774-18793. doi: 10.1021/acs.jafc.4c04821. Epub 2024 Aug 15.
9
Optimized protein extraction for quantitative proteomics of yeasts.用于酵母定量蛋白质组学的优化蛋白质提取方法
PLoS One. 2007 Oct 24;2(10):e1078. doi: 10.1371/journal.pone.0001078.
10
Roles for the two-hybrid system in exploration of the yeast protein interactome.双杂交系统在探索酵母蛋白质相互作用组中的作用。
Mol Cell Proteomics. 2002 Aug;1(8):561-6. doi: 10.1074/mcp.r200005-mcp200.

引用本文的文献

1
Regulation of biotic interactions and responses to abiotic stresses by MAP kinase pathways in plant pathogenic fungi.植物病原真菌中丝裂原活化蛋白激酶途径对生物相互作用的调控及对非生物胁迫的响应
Stress Biol. 2021 Aug 18;1(1):5. doi: 10.1007/s44154-021-00004-3.
2
Proteome-wide Identification of Novel Ceramide-binding Proteins by Yeast Surface cDNA Display and Deep Sequencing.通过酵母表面cDNA展示和深度测序进行全蛋白质组范围内新型神经酰胺结合蛋白的鉴定。
Mol Cell Proteomics. 2016 Apr;15(4):1232-45. doi: 10.1074/mcp.M115.055954. Epub 2016 Jan 4.
3
Human Urine Proteomics: Analytical Techniques and Clinical Applications in Renal Diseases.

本文引用的文献

1
Detection of multiple autoantibodies in patients with ankylosing spondylitis using nucleic acid programmable protein arrays.利用核酸可编程蛋白芯片检测强直性脊柱炎患者的多种自身抗体。
Mol Cell Proteomics. 2012 Feb;11(2):M9.00384. doi: 10.1074/mcp.M9.00384.
2
Systems biology approaches to disease marker discovery.系统生物学方法在疾病标志物发现中的应用。
Dis Markers. 2010;28(4):209-24. doi: 10.3233/DMA-2010-0707.
3
A proteome-wide analysis of kinase-substrate network in the DNA damage response.在 DNA 损伤反应中激酶-底物网络的蛋白质组学分析。
人类尿液蛋白质组学:肾脏疾病中的分析技术与临床应用
Int J Proteomics. 2015;2015:782798. doi: 10.1155/2015/782798. Epub 2015 Nov 29.
4
Metabolic engineering of yeast to produce fatty acid-derived biofuels: bottlenecks and solutions.用于生产脂肪酸衍生生物燃料的酵母代谢工程:瓶颈与解决方案
Front Microbiol. 2015 Jun 8;6:554. doi: 10.3389/fmicb.2015.00554. eCollection 2015.
5
Utilizing Yeast Surface Human Proteome Display Libraries to Identify Small Molecule-Protein Interactions.利用酵母表面人蛋白质组展示文库鉴定小分子-蛋白质相互作用。
Methods Mol Biol. 2015;1319:203-14. doi: 10.1007/978-1-4939-2748-7_11.
6
Identification of Posttranslational Modification-Dependent Protein Interactions Using Yeast Surface Displayed Human Proteome Libraries.利用酵母表面展示的人类蛋白质组文库鉴定翻译后修饰依赖性蛋白质相互作用
Methods Mol Biol. 2015;1319:193-202. doi: 10.1007/978-1-4939-2748-7_10.
7
New host factors important for respiratory syncytial virus (RSV) replication revealed by a novel microfluidics screen for interactors of matrix (M) protein.通过一种针对基质(M)蛋白相互作用分子的新型微流控筛选揭示的对呼吸道合胞病毒(RSV)复制重要的新宿主因子。
Mol Cell Proteomics. 2015 Mar;14(3):532-43. doi: 10.1074/mcp.M114.044107. Epub 2015 Jan 2.
8
Accurate prediction of inducible transcription factor binding intensities in vivo.准确预测体内诱导转录因子结合强度。
PLoS Genet. 2012;8(3):e1002610. doi: 10.1371/journal.pgen.1002610. Epub 2012 Mar 29.
9
Direct iterative protein profiling (DIPP) - an innovative method for large-scale protein detection applied to budding yeast mitosis.直接迭代蛋白质谱分析(DIPP)——一种应用于芽殖酵母有丝分裂的大规模蛋白质检测的创新方法。
Mol Cell Proteomics. 2012 Feb;11(2):M111.012682. doi: 10.1074/mcp.M111.012682. Epub 2011 Oct 13.
10
A survey of computational methods and error rate estimation procedures for peptide and protein identification in shotgun proteomics.用于在鸟枪法蛋白质组学中鉴定肽和蛋白质的计算方法和错误率估计程序的调查。
J Proteomics. 2010 Oct 10;73(11):2092-123. doi: 10.1016/j.jprot.2010.08.009. Epub 2010 Sep 8.
J Biol Chem. 2010 Apr 23;285(17):12803-12. doi: 10.1074/jbc.M110.106989. Epub 2010 Feb 27.
4
Deciphering protein kinase specificity through large-scale analysis of yeast phosphorylation site motifs.通过大规模分析酵母磷酸化位点基序来破译蛋白激酶特异性。
Sci Signal. 2010 Feb 16;3(109):ra12. doi: 10.1126/scisignal.2000482.
5
Value of using multiple proteases for large-scale mass spectrometry-based proteomics.利用多种蛋白酶进行大规模基于质谱的蛋白质组学研究的价值。
J Proteome Res. 2010 Mar 5;9(3):1323-9. doi: 10.1021/pr900863u.
6
Global identification of protein kinase substrates by protein microarray analysis.基于蛋白质微阵列分析的蛋白质激酶底物的全局鉴定。
Nat Protoc. 2009;4(12):1820-7. doi: 10.1038/nprot.2009.194.
7
Systems biology from a yeast omics perspective.从酵母组学角度看系统生物学。
FEBS Lett. 2009 Dec 17;583(24):3895-9. doi: 10.1016/j.febslet.2009.11.011.
8
Profiling the human protein-DNA interactome reveals ERK2 as a transcriptional repressor of interferon signaling.对人类蛋白质-DNA相互作用组进行分析揭示了ERK2作为干扰素信号转导的转录抑制因子。
Cell. 2009 Oct 30;139(3):610-22. doi: 10.1016/j.cell.2009.08.037.
9
Studies of the expression of human poly(ADP-ribose) polymerase-1 in Saccharomyces cerevisiae and identification of PARP-1 substrates by yeast proteome microarray screening.酵母细胞中人类多聚(ADP-核糖)聚合酶-1 表达的研究及通过酵母蛋白组微阵列筛选鉴定 PARP-1 底物。
Biochemistry. 2009 Dec 15;48(49):11745-54. doi: 10.1021/bi901387k.
10
A protein microarray-based analysis of S-nitrosylation.基于蛋白质微阵列的 S-亚硝基化分析。
Proc Natl Acad Sci U S A. 2009 Nov 10;106(45):18948-53. doi: 10.1073/pnas.0900729106. Epub 2009 Oct 28.