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代谢反应与基因调控的整合。

Integration of metabolic reactions and gene regulation.

机构信息

Institute of Statistics, Academia Sinica, Taipei, Taiwan, ROC.

出版信息

Mol Biotechnol. 2011 Jan;47(1):70-82. doi: 10.1007/s12033-010-9325-y.

DOI:10.1007/s12033-010-9325-y
PMID:20737299
Abstract

Metabolic reactions and gene regulation are two primary processes of cells. In response to environmental changes cells often adjust the regulatory programs and shift the metabolic states. An integrative investigation and modeling of these two processes would improve our understanding about the cellular systems and may generate substantial impacts in medicine, agriculture, environmental protection, and energy production. We review the studies of the various aspects of the crosstalk between metabolic reactions and gene regulation, including models, empirical evidence, and available databases.

摘要

代谢反应和基因调控是细胞的两个主要过程。细胞通常会调整调控程序并改变代谢状态,以应对环境变化。对这两个过程进行综合研究和建模将提高我们对细胞系统的理解,并可能在医学、农业、环境保护和能源生产等领域产生重大影响。我们综述了代谢反应和基因调控之间相互作用的各个方面的研究,包括模型、经验证据和现有数据库。

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Genome Res. 2010 Aug;20(8):1020-36. doi: 10.1101/gr.103341.109. Epub 2010 Jun 10.
2
Comparison of two GM maize varieties with a near-isogenic non-GM variety using transcriptomics, proteomics and metabolomics.使用转录组学、蛋白质组学和代谢组学比较两种转基因玉米品种与近等基因非转基因品种。
Plant Biotechnol J. 2010 May 1;8(4):436-51. doi: 10.1111/j.1467-7652.2009.00487.x. Epub 2010 Feb 3.
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'Omics' analyses of regulatory networks in plant abiotic stress responses.
植物非生物胁迫响应中调控网络的“组学”分析。
Curr Opin Plant Biol. 2010 Apr;13(2):132-8. doi: 10.1016/j.pbi.2009.12.006. Epub 2010 Jan 14.
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An integrated functional genomic study of acute phenobarbital exposure in the rat.急性苯巴比妥暴露大鼠的综合功能基因组学研究。
BMC Genomics. 2010 Jan 6;11:9. doi: 10.1186/1471-2164-11-9.
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Developmental stage specificity and the role of mitochondrial metabolism in the response of Arabidopsis leaves to prolonged mild osmotic stress.发育阶段特异性和线粒体代谢在拟南芥叶片对长时间轻度渗透胁迫响应中的作用。
Plant Physiol. 2010 Jan;152(1):226-44. doi: 10.1104/pp.109.148965. Epub 2009 Nov 11.
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Cellular stress created by intermediary metabolite imbalances.中间代谢物失衡产生的细胞应激。
Proc Natl Acad Sci U S A. 2009 Nov 17;106(46):19515-20. doi: 10.1073/pnas.0910586106. Epub 2009 Nov 3.
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Assessing the impact of transcriptomics, proteomics and metabolomics on fungal phytopathology.评估转录组学、蛋白质组学和代谢组学对真菌植物病理学的影响。
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An integrated genomics approach to define niche establishment by Rhodococcus fascians.一种通过整合基因组学方法来定义 fascians 红球菌的生态位建立过程。
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