Suppr超能文献

先前报道的 SP 和 Stewart-Letscher 菌组的生物分类,以及对 SP 菌组中 Necropsobacter gen. nov. 和 Necropsobacter rosorum sp. nov. 这两种生物的描述。

Classification of organisms previously reported as the SP and Stewart-Letscher groups, with descriptions of Necropsobacter gen. nov. and of Necropsobacter rosorum sp. nov. for organisms of the SP group.

机构信息

Department of Veterinary Disease Biology, Faculty of Life Sciences, University of Copenhagen, 4 Stigboejlen, DK-1870 Frederiksberg C, Denmark.

Institute of Veterinary Bacteriology, Vetsuisse-Faculty, University of Bern, CH-3001 Bern, Switzerland.

出版信息

Int J Syst Evol Microbiol. 2011 Aug;61(Pt 8):1829-1836. doi: 10.1099/ijs.0.024174-0. Epub 2010 Sep 3.

Abstract

To allow classification of bacteria previously reported as the SP group and the Stewart-Letscher group, 35 isolates from rodents (21), rabbits (eight), a dog and humans (five) were phenotypically and genotypically characterized. Comparison of partial rpoB sequences showed that 34 of the isolates were closely related, demonstrating at least 97.4 % similarity. 16S rRNA gene sequence comparison of 20 selected isolates confirmed the monophyly of the SP group and revealed 98.5 %-100 % similarity between isolates. A blast search using the 16S rRNA gene sequences showed that the highest similarity outside the SP group was 95.5 % to an unclassified rat isolate. The single strain, P625, representing the Stewart-Letscher group showed the highest 16S rRNA gene similarity (94.9-95.5 %) to members of the SP group. recN gene sequence analysis of 11 representative strains resulted in similarities of 97-100 % among the SP group strains, which showed 80 % sequence similarity to the Stewart-Letscher group strain. Sequence similarity values based on the recN gene, indicative for whole genome similarity, showed the SP group being clearly separated from established genera, whereas the Stewart-Letscher group strain was associated with the SP group. A new genus, Necropsobacter gen. nov., with only one species, Necropsobacter rosorum sp. nov., is proposed to include all members of the SP group. The new genus can be separated from existing genera of the family Pasteurellaceae by at least three phenotypic characters. The most characteristic properties of the new genus are that haemolysis is not observed on bovine blood agar, positive reactions are observed in the porphyrin test, acid is produced from (+)-L-arabinose, (+)-D-xylose, dulcitol, (+)-D-galactose, (+)-D-mannose, maltose and melibiose, and negative reactions are observed for symbiotic growth, urease, ornithine decarboxylase and indole. Previous publications have documented that both ubiquinones and demethylmenaquinone were produced by the proposed type strain of the new genus, Michel A/76(T), and that the major polyamine of representative strains (type strain not included) of the genus is 1,3-diaminopropane, spermidine is present in moderate amounts and putrescine and spermine are detectable only in minor amounts. The major fatty acids of strain Michel A/76(T) are C(14 : 0), C(16 : 0), C(16:1)ω7c and summed feature C(14 : 0) 3-OH/iso-C(16 : 1) I. This fatty acid profile is typical for members of the family Pasteurellaceae. The G+C content of DNA of strain Michel A/76(T) was estimated to be 52.5 mol% in a previous investigation. The type strain is P709(T) ( = Michel A/76(T)  = CCUG 28028(T)  = CIP 110147(T)  = CCM 7802(T)).

摘要

为了能够对先前报道的 SP 群和 Stewart-Letscher 群细菌进行分类,对来自啮齿动物(21 株)、兔(8 株)、犬和人类(5 株)的 35 株分离株进行了表型和基因型特征分析。部分 rpoB 序列的比较表明,其中 34 株密切相关,显示出至少 97.4%的相似性。20 株选定分离株的 16S rRNA 基因序列比较证实了 SP 群的单系性,并显示分离株之间的相似度为 98.5%-100%。使用 16S rRNA 基因序列进行 Blast 搜索表明,SP 群之外的最高相似度为 95.5%,与未分类的大鼠分离株相似。代表 Stewart-Letscher 群的单株 P625 与 SP 群成员的 16S rRNA 基因相似度最高(94.9-95.5%)。11 株代表性菌株的 recN 基因序列分析结果表明,SP 群菌株之间的相似度为 97-100%,与 Stewart-Letscher 群菌株的相似度为 80%。基于 recN 基因的序列相似性(指示全基因组相似性)表明,SP 群与已建立的属明显分离,而 Stewart-Letscher 群菌株与 SP 群相关。建议建立一个新属 Necropsobacter gen. nov.,仅包含一个种 Necropsobacter rosorum sp. nov.,用于包含 SP 群的所有成员。该新属可通过至少三个表型特征与巴氏杆菌科的现有属区分开来。该新属的最特征性性质是在牛血琼脂上观察不到溶血,在卟啉试验中观察到阳性反应,可从(+)-L-阿拉伯糖、(+)-D-木糖、肌醇、(+)-D-半乳糖、(+)-D-甘露糖、麦芽糖和棉子糖产酸,共生生长、脲酶、鸟氨酸脱羧酶和吲哚反应为阴性。先前的出版物记录表明,新属的提议模式株都产生了泛醌和脱甲基menaquinone,代表菌株(不包括模式株)的主要多胺是 1,3-二氨基丙烷,腐胺含量适中,精胺和亚精胺仅可微量检测到。Michel A/76(T)株的主要脂肪酸为 C(14:0)、C(16:0)、C(16:1)ω7c 和总和特征 C(14:0) 3-OH/iso-C(16:1) I。这种脂肪酸图谱是巴氏杆菌科成员的典型特征。Michel A/76(T)株的 DNA G+C 含量在先前的研究中估计为 52.5 mol%。模式株为 P709(T)(= Michel A/76(T) = CCUG 28028(T) = CIP 110147(T) = CCM 7802(T))。

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍。

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

文档翻译

学术文献翻译模型,支持多种主流文档格式。

立即体验