Universidade de São Paulo, Instituto de Física de São Carlos, São Carlos, Brazil.
IET Syst Biol. 2010 Sep;4(5):311-29. doi: 10.1049/iet-syb.2010.0058.
Mathematical models, as instruments for understanding the workings of nature, are a traditional tool of physics, but they also play an ever increasing role in biology--in the description of fundamental processes as well as that of complex systems. In this review, the authors discuss two examples of the application of group theoretical methods, which constitute the mathematical discipline for a quantitative description of the idea of symmetry, to genetics. The first one appears, in the form of a pseudo-orthogonal (Lorentz like) symmetry, in the stochastic modelling of what may be regarded as the simplest possible example of a genetic network and, hopefully, a building block for more complicated ones: a single self-interacting or externally regulated gene with only two possible states: 'on' and 'off'. The second is the algebraic approach to the evolution of the genetic code, according to which the current code results from a dynamical symmetry breaking process, starting out from an initial state of complete symmetry and ending in the presently observed final state of low symmetry. In both cases, symmetry plays a decisive role: in the first, it is a characteristic feature of the dynamics of the gene switch and its decay to equilibrium, whereas in the second, it provides the guidelines for the evolution of the coding rules.
数学模型作为理解自然运作的工具,是物理学的传统工具,但它们在生物学中也扮演着越来越重要的角色——无论是在描述基本过程还是复杂系统方面。在这篇综述中,作者讨论了群论方法在遗传学中的两个应用实例,群论方法是一种定量描述对称概念的数学学科。第一个实例以拟正交(类洛伦兹)对称性的形式出现在对最简单的遗传网络模型的随机建模中,希望这可以作为更复杂网络的构建模块:一个自我相互作用或外部调节的基因,只有两种可能的状态:“开”和“关”。第二个实例是遗传密码进化的代数方法,根据该方法,当前的密码子是从完全对称的初始状态开始,经过动态对称破缺过程,最终达到目前观察到的低对称最终状态。在这两种情况下,对称都起着决定性的作用:在第一种情况下,它是基因开关及其向平衡态衰减的动力学的特征;而在第二种情况下,它为编码规则的进化提供了指导方针。