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通过 SCHEMA 结构指导的重组,对真菌纤维二糖水解酶 I 类酶进行高效筛选以获得热稳定序列模块。

Efficient screening of fungal cellobiohydrolase class I enzymes for thermostabilizing sequence blocks by SCHEMA structure-guided recombination.

机构信息

Division of Chemistry and Chemical Engineering, California Institute of Technology, Pasadena, CA 91125, USA.

出版信息

Protein Eng Des Sel. 2010 Nov;23(11):871-80. doi: 10.1093/protein/gzq063. Epub 2010 Sep 16.

Abstract

We describe an efficient SCHEMA recombination-based approach for screening homologous enzymes to identify stabilizing amino acid sequence blocks. This approach has been used to generate active, thermostable cellobiohydrolase class I (CBH I) enzymes from the 390 625 possible chimeras that can be made by swapping eight blocks from five fungal homologs. Constructing and characterizing the parent enzymes and just 32 'monomeras' containing a single block from a homologous enzyme allowed stability contributions to be assigned to 36 of the 40 blocks from which the CBH I chimeras can be assembled. Sixteen of 16 predicted thermostable chimeras, with an average of 37 mutations relative to the closest parent, are more thermostable than the most stable parent CBH I, from the thermophilic fungus Talaromyces emersonii. Whereas none of the parent CBH Is were active >65°C, stable CBH I chimeras hydrolyzed solid cellulose at 70°C. In addition to providing a collection of diverse, thermostable CBH Is that can complement previously described stable CBH II chimeras (Heinzelman et al., Proc. Natl Acad. Sci. USA 2009;106:5610-5615) in formulating application-specific cellulase mixtures, the results show the utility of SCHEMA recombination for screening large swaths of natural enzyme sequence space for desirable amino acid blocks.

摘要

我们描述了一种基于 SCHEMA 重组的高效方法,用于筛选同源酶以鉴定稳定的氨基酸序列块。该方法已被用于从可以通过交换五个真菌同源物的八个块来产生的 390625 种可能的嵌合体中产生活性、热稳定的纤维素酶 I 类(CBH I)酶。构建和表征亲本酶以及仅包含同源酶中单个块的 32 个“单体”,可以将稳定性贡献分配给可以组装 CBH I 嵌合体的 40 个块中的 36 个。16 个预测的耐热嵌合体中的 16 个,与最接近的亲本相比平均有 37 个突变,比最稳定的亲本 CBH I(来自嗜热真菌塔尔罗姆斯 emersonii)更耐热。虽然没有一个亲本 CBH I 在>65°C 时具有活性,但稳定的 CBH I 嵌合体在 70°C 下水解固体纤维素。除了提供一系列多样化的、耐热的 CBH I 之外,这些酶可以补充以前描述的稳定的 CBH II 嵌合体(Heinzelman 等人,Proc. Natl Acad. Sci. USA 2009;106:5610-5615),用于制定特定应用的纤维素酶混合物,结果表明 SCHEMA 重组在筛选大片段天然酶序列空间以获得所需的氨基酸块方面的有效性。

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