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肝素硫酸糖组学:迈向系统生物学策略。

Heparan sulfate glycomics: towards systems biology strategies.

机构信息

Centre for Glycobiology, Institute of Integrative Biology, University of Liverpool, Crown Street, Liverpool L69 7ZB, UK.

出版信息

Biochem Soc Trans. 2010 Oct;38(5):1356-60. doi: 10.1042/BST0381356.

DOI:10.1042/BST0381356
PMID:20863313
Abstract

HSs (heparan sulfates) are a complex family of cell-surface and matrix polysaccharides that have diverse biological functions, underpinned by structurally diverse patterns of backbone chain modification, especially by sulfate groups. These variant structures represent a molecular code, the 'heparanome', that confers the ability to interact selectively with a wide interactome of proteins, the 'heparactome', and thereby influence a network of cellular events. It is becoming increasingly apparent that understanding the structure-activity relationships of these enigmatic molecules requires the development of a holistic systems biology view of their structure and interactions. In the present paper, I describe some of the new tools available to realize this strategy, and discuss the future potential for the combined application of glycomics and other '-omics' approaches to define the molecular code of the heparanome.

摘要

HSs(肝素硫酸盐)是细胞表面和基质多糖的复杂家族,具有多种生物学功能,其结构多样的骨架链修饰模式(尤其是硫酸盐基团)为其提供了基础。这些变体结构代表了一种分子密码,即“肝素组”,它使与广泛的蛋白质相互作用组“肝素相互作用组”选择性相互作用的能力,并由此影响细胞事件网络。越来越明显的是,要了解这些神秘分子的结构-活性关系,需要从整体系统生物学的角度来研究它们的结构和相互作用。在本文中,我描述了实现这一策略的一些新工具,并讨论了糖组学和其他“组学”方法联合应用来定义肝素组分子密码的未来潜力。

相似文献

1
Heparan sulfate glycomics: towards systems biology strategies.肝素硫酸糖组学:迈向系统生物学策略。
Biochem Soc Trans. 2010 Oct;38(5):1356-60. doi: 10.1042/BST0381356.
2
Glycomics profiling of heparan sulfate structure and activity.硫酸乙酰肝素结构与活性的糖组学分析
Methods Enzymol. 2010;480:65-85. doi: 10.1016/S0076-6879(10)80004-7.
3
Applications of isotopes in advancing structural and functional heparanomics.同位素在推进结构和功能肝素组学中的应用。
Anal Bioanal Chem. 2011 Jan;399(2):559-70. doi: 10.1007/s00216-010-4166-x. Epub 2010 Sep 14.
4
Heparan sulfate: decoding a dynamic multifunctional cell regulator.硫酸乙酰肝素:解读一种动态多功能细胞调节因子
Trends Cell Biol. 2001 Feb;11(2):75-82. doi: 10.1016/s0962-8924(00)01897-3.
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A Systems View of the Heparan Sulfate Interactome.肝素硫酸相互作用组的系统观。
J Histochem Cytochem. 2021 Feb;69(2):105-119. doi: 10.1369/0022155420988661.
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Glycosaminoglycanomics: where we are.糖胺聚糖组学:我们目前的进展
Glycoconj J. 2017 Jun;34(3):339-349. doi: 10.1007/s10719-016-9747-2. Epub 2016 Nov 30.
7
Glycomics analysis of mammalian heparan sulfates modified by the human extracellular sulfatase HSulf2.人类细胞外硫酸酯酶 HSulf2 修饰的哺乳动物肝素硫酸糖的糖组学分析。
PLoS One. 2011 Feb 8;6(2):e16689. doi: 10.1371/journal.pone.0016689.
8
Multi-faceted substrate specificity of heparanase.肝素酶的多方面底物特异性。
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Generating heparan sulfate saccharide libraries for glycomics applications.用于糖组学应用的肝素硫酸糖文库的生成。
Nat Protoc. 2010 May;5(5):821-33. doi: 10.1038/nprot.2010.17. Epub 2010 Apr 8.
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A systems biology approach for the investigation of the heparin/heparan sulfate interactome.系统生物学方法研究肝素/硫酸乙酰肝素相互作用组。
J Biol Chem. 2011 Jun 3;286(22):19892-904. doi: 10.1074/jbc.M111.228114. Epub 2011 Mar 30.

引用本文的文献

1
Glycosaminoglycans, Instructive Biomolecules That Regulate Cellular Activity and Synaptic Neuronal Control of Specific Tissue Functional Properties.糖胺聚糖,调节细胞活性和特定组织功能特性的突触神经元控制的指导性生物分子。
Int J Mol Sci. 2025 Mar 12;26(6):2554. doi: 10.3390/ijms26062554.
2
The Glycosaminoglycan Side Chains and Modular Core Proteins of Heparan Sulphate Proteoglycans and the Varied Ways They Provide Tissue Protection by Regulating Physiological Processes and Cellular Behaviour.糖胺聚糖侧链和硫酸乙酰肝素蛋白聚糖的模块化核心蛋白,以及它们通过调节生理过程和细胞行为提供组织保护的多种方式。
Int J Mol Sci. 2023 Sep 14;24(18):14101. doi: 10.3390/ijms241814101.
3
Structure-Activity Relationships of Bioengineered Heparin/Heparan Sulfates Produced in Different Bioreactors.
不同生物反应器中生产的生物工程肝素/硫酸乙酰肝素的构效关系
Molecules. 2017 May 15;22(5):806. doi: 10.3390/molecules22050806.
4
Glycosaminoglycanomics: where we are.糖胺聚糖组学:我们目前的进展
Glycoconj J. 2017 Jun;34(3):339-349. doi: 10.1007/s10719-016-9747-2. Epub 2016 Nov 30.
5
Distinct patterns of endosulfatase gene expression during Xenopus laevis limb development and regeneration.非洲爪蟾肢体发育和再生过程中硫酯酶基因的独特表达模式。
Regeneration (Oxf). 2015 Mar 13;2(1):19-25. doi: 10.1002/reg2.27. eCollection 2015 Feb.
6
Proteoglycans in Normal and Healing Skin.正常皮肤与愈合皮肤中的蛋白聚糖
Adv Wound Care (New Rochelle). 2015 Mar 1;4(3):152-173. doi: 10.1089/wound.2013.0464.
7
Complementing the Sugar Code: Role of GAGs and Sialic Acid in Complement Regulation.糖代码的补充:糖胺聚糖和唾液酸在补体调节中的作用
Front Immunol. 2015 Feb 2;6:25. doi: 10.3389/fimmu.2015.00025. eCollection 2015.
8
Glycomics approaches for the bioassay and structural analysis of heparin/heparan sulphates.用于肝素/硫酸乙酰肝素生物测定和结构分析的糖组学方法。
Metabolites. 2012 Nov 28;2(4):1060-89. doi: 10.3390/metabo2041060.
9
New glucuronic acid donors for the modular synthesis of heparan sulfate oligosaccharides.用于硫酸乙酰肝素寡糖模块合成的新型葡萄糖醛酸供体。
Org Biomol Chem. 2014 Apr 7;12(13):2087-98. doi: 10.1039/c3ob42312c. Epub 2014 Feb 19.
10
The role of complement in age-related macular degeneration: heparan sulphate, a ZIP code for complement factor H?补体在年龄相关性黄斑变性中的作用:硫酸乙酰肝素,补体因子H的邮政编码?
J Innate Immun. 2014;6(4):407-16. doi: 10.1159/000356513. Epub 2013 Dec 7.