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Limited resources in a driven diffusion process.
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Natural amino acids do not require their native tRNAs for efficient selection by the ribosome.
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3
The dynamics of supply and demand in mRNA translation.
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tRNA engineering for manipulating genetic code.
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Slow sites in an exclusion process with limited resources.
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Engineering Ribosomal Machinery for Noncanonical Amino Acid Incorporation.
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Binding of formylmethionyl-tRNA and aminoacyl-tRNA to ribosomes.
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A tRNA aminoacylation system for non-natural amino acids based on a programmable ribozyme.
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Modelling the effect of ribosome mobility on the rate of protein synthesis.
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引用本文的文献

1
Whole cell biophysical modeling of codon-tRNA competition reveals novel insights related to translation dynamics.
PLoS Comput Biol. 2020 Jul 10;16(7):e1008038. doi: 10.1371/journal.pcbi.1008038. eCollection 2020 Jul.
2
A Mechanistic Model for Cooperative Behavior of Co-transcribing RNA Polymerases.
PLoS Comput Biol. 2016 Aug 12;12(8):e1005069. doi: 10.1371/journal.pcbi.1005069. eCollection 2016 Aug.
3
Mathematical and Computational Modelling of Ribosomal Movement and Protein Synthesis: an overview.
Comput Struct Biotechnol J. 2012 Feb 20;1:e201204002. doi: 10.5936/csbj.201204002. eCollection 2012.
4
The dynamics of supply and demand in mRNA translation.
PLoS Comput Biol. 2011 Oct;7(10):e1002203. doi: 10.1371/journal.pcbi.1002203. Epub 2011 Oct 13.

本文引用的文献

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How the sequence of a gene can tune its translation.
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Competition between multiple totally asymmetric simple exclusion processes for a finite pool of resources.
Phys Rev E Stat Nonlin Soft Matter Phys. 2009 Sep;80(3 Pt 1):031142. doi: 10.1103/PhysRevE.80.031142. Epub 2009 Sep 28.
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Genome-wide analysis of tRNA charging and activation of the eIF2 kinase Gcn2p.
J Biol Chem. 2009 Sep 11;284(37):25254-67. doi: 10.1074/jbc.M109.000877. Epub 2009 Jun 22.
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Queueing phase transition: theory of translation.
Phys Rev Lett. 2009 May 15;102(19):198104. doi: 10.1103/PhysRevLett.102.198104.
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Inhomogeneous exclusion processes with extended objects: the effect of defect locations.
Phys Rev E Stat Nonlin Soft Matter Phys. 2007 Nov;76(5 Pt 1):051113. doi: 10.1103/PhysRevE.76.051113. Epub 2007 Nov 13.
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Clustered bottlenecks in mRNA translation and protein synthesis.
Phys Rev Lett. 2004 Nov 5;93(19):198101. doi: 10.1103/PhysRevLett.93.198101. Epub 2004 Nov 1.
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Disordered asymmetric simple exclusion process: mean-field treatment.
Phys Rev E Stat Nonlin Soft Matter Phys. 2004;70(1 Pt 2):016108. doi: 10.1103/PhysRevE.70.016108. Epub 2004 Jul 2.
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Queuing transitions in the asymmetric simple exclusion process.
Phys Rev E Stat Nonlin Soft Matter Phys. 2003 Nov;68(5 Pt 2):056122. doi: 10.1103/PhysRevE.68.056122. Epub 2003 Nov 24.
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Totally asymmetric exclusion process with extended objects: a model for protein synthesis.
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