Department of Molecular and Cellular Biology, University of Arizona, Tucson, AZ 85721, USA.
J Bacteriol. 2010 Nov;192(22):6064-76. doi: 10.1128/JB.00726-10. Epub 2010 Sep 24.
Complex gene regulatory circuits exhibit emergent properties that are difficult to predict from the behavior of the components. One such property is the stability of regulatory states. Here we analyze the stability of the lysogenic state of phage λ. In this state, the virus maintains a stable association with the host, and the lytic functions of the virus are repressed by the viral CI repressor. This state readily switches to the lytic pathway when the host SOS system is induced. A low level of SOS-dependent switching occurs without an overt stimulus. We found that the intrinsic rate of switching to the lytic pathway, measured in a host lacking the SOS response, was almost undetectably low, probably less than 10(-8)/generation. We surmise that this low rate has not been selected directly during evolution but results from optimizing the rate of switching in a wild-type host over the natural range of SOS-inducing conditions. We also analyzed a mutant, λprm240, in which the promoter controlling CI expression was weakened, rendering lysogens unstable. Strikingly, the intrinsic stability of λprm240 lysogens depended markedly on the growth conditions; lysogens grown in minimal medium were nearly stable but switched at high rates when grown in rich medium. These effects on stability likely reflect corresponding effects on the strength of the prm240 promoter, measured in an uncoupled assay system. Several derivatives of λprm240 with altered stabilities were characterized. This mutant and its derivatives afford a model system for further analysis of stability.
复杂的基因调控回路表现出的涌现特性,很难从其组成部分的行为来预测。其中一个特性是调控状态的稳定性。在这里,我们分析噬菌体 λ 的溶原状态的稳定性。在这种状态下,病毒与宿主保持稳定的关联,病毒的 CI 阻遏物抑制病毒的裂解功能。当宿主 SOS 系统被诱导时,这种状态很容易切换到裂解途径。在没有明显刺激的情况下,SOS 依赖性切换会以低水平发生。我们发现,在缺乏 SOS 反应的宿主中,切换到裂解途径的固有速率几乎难以检测到,可能低于 10(-8)/代。我们推测,这种低速率不是在进化过程中直接选择的,而是通过在野生型宿主中优化 SOS 诱导条件的自然范围内的切换速率而产生的。我们还分析了一个突变体 λprm240,其中控制 CI 表达的启动子被削弱,导致溶原不稳定。引人注目的是,λprm240 溶原的固有稳定性显著依赖于生长条件;在基本培养基中生长的溶原几乎稳定,但在丰富培养基中生长时切换速度很高。这些对稳定性的影响可能反映了在不耦合测定系统中对 prm240 启动子强度的相应影响。对具有不同稳定性的 λprm240 的几个衍生物进行了表征。该突变体及其衍生物为进一步分析稳定性提供了一个模型系统。