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本文引用的文献

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The complete genome sequence of Moorella thermoacetica (f. Clostridium thermoaceticum).嗜热栖热菌(原热醋梭菌)的全基因组序列
Environ Microbiol. 2008 Oct;10(10):2550-73. doi: 10.1111/j.1462-2920.2008.01679.x. Epub 2008 Jun 9.
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Xenon in and at the end of the tunnel of bifunctional carbon monoxide dehydrogenase/acetyl-CoA synthase.双功能一氧化碳脱氢酶/乙酰辅酶A合酶通道内及通道末端的氙。
Biochemistry. 2008 Mar 18;47(11):3474-83. doi: 10.1021/bi702386t. Epub 2008 Feb 23.
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Evolutionary analysis of the TPP-dependent enzyme family.硫胺素焦磷酸(TPP)依赖性酶家族的进化分析。
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Pulsed electron paramagnetic resonance experiments identify the paramagnetic intermediates in the pyruvate ferredoxin oxidoreductase catalytic cycle.脉冲电子顺磁共振实验确定了丙酮酸铁氧化还原蛋白氧化还原酶催化循环中的顺磁性中间体。
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Anabolic Incorporation of Oxalate by Oxalobacter formigenes.粪杆菌对草酸盐的合成掺入作用。
Appl Environ Microbiol. 1996 Aug;62(8):3011-3. doi: 10.1128/aem.62.8.3011-3013.1996.
6
Purifications and characterizations of a ferredoxin and its related 2-oxoacid:ferredoxin oxidoreductase from the hyperthermophilic archaeon, Sulfolobus solfataricus P1.来自嗜热古菌嗜热栖热菌P1的一种铁氧化还原蛋白及其相关的2-氧代酸:铁氧化还原蛋白氧化还原酶的纯化与表征
J Biochem Mol Biol. 2006 Jan 31;39(1):46-54. doi: 10.5483/bmbrep.2006.39.1.046.
7
Oxalate- and Glyoxylate-Dependent Growth and Acetogenesis by Clostridium thermoaceticum.产乙酸梭菌的草酸和乙醛酸依赖性生长和乙酰生成。
Appl Environ Microbiol. 1993 Sep;59(9):3062-9. doi: 10.1128/aem.59.9.3062-3069.1993.
8
Radical phosphate transfer mechanism for the thiamin diphosphate- and FAD-dependent pyruvate oxidase from Lactobacillus plantarum. Kinetic coupling of intercofactor electron transfer with phosphate transfer to acetyl-thiamin diphosphate via a transient FAD semiquinone/hydroxyethyl-ThDP radical pair.植物乳杆菌中硫胺素二磷酸和黄素腺嘌呤二核苷酸依赖性丙酮酸氧化酶的自由基磷酸转移机制。通过瞬态黄素腺嘌呤二核苷酸半醌/羟乙基硫胺素二磷酸自由基对,辅因子间电子转移与磷酸转移至乙酰硫胺素二磷酸的动力学偶联。
Biochemistry. 2005 Oct 11;44(40):13291-303. doi: 10.1021/bi051058z.
9
Gene expression and characterization of two 2-oxoacid:ferredoxin oxidoreductases from Aeropyrum pernix K1.来自嗜热栖热菌K1的两种2-氧代酸:铁氧化还原蛋白氧化还原酶的基因表达及特性分析
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10
Oxalate metabolism by the acetogenic bacterium Moorella thermoacetica.产乙酸细菌嗜热栖热菌的草酸盐代谢
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鉴定和表征草酸氧化还原酶,一种新型的依赖于硫胺素焦磷酸的 2-酮酸氧化还原酶,使微生物能够在厌氧条件下利用草酸进行生长。

Identification and characterization of oxalate oxidoreductase, a novel thiamine pyrophosphate-dependent 2-oxoacid oxidoreductase that enables anaerobic growth on oxalate.

机构信息

Department of Biological Chemistry, University of Michigan, Ann Arbor, Michigan 48109-0606, USA.

出版信息

J Biol Chem. 2010 Dec 24;285(52):40515-24. doi: 10.1074/jbc.M110.155739. Epub 2010 Oct 18.

DOI:10.1074/jbc.M110.155739
PMID:20956531
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC3003350/
Abstract

Moorella thermoacetica is an anaerobic acetogen, a class of bacteria that is found in the soil, the animal gastrointestinal tract, and the rumen. This organism engages the Wood-Ljungdahl pathway of anaerobic CO(2) fixation for heterotrophic or autotrophic growth. This paper describes a novel enzyme, oxalate oxidoreductase (OOR), that enables M. thermoacetica to grow on oxalate, which is produced in soil and is a common component of kidney stones. Exposure to oxalate leads to the induction of three proteins that are subunits of OOR, which oxidizes oxalate coupled to the production of two electrons and CO(2) or bicarbonate. Like other members of the 2-oxoacid:ferredoxin oxidoreductase family, OOR contains thiamine pyrophosphate and three [Fe(4)S(4)] clusters. However, unlike previously characterized members of this family, OOR does not use coenzyme A as a substrate. Oxalate is oxidized with a k(cat) of 0.09 s(-1) and a K(m) of 58 μM at pH 8. OOR also oxidizes a few other 2-oxoacids (which do not induce OOR) also without any requirement for CoA. The enzyme transfers its reducing equivalents to a broad range of electron acceptors, including ferredoxin and the nickel-dependent carbon monoxide dehydrogenase. In conjunction with the well characterized Wood-Ljungdahl pathway, OOR should be sufficient for oxalate metabolism by M. thermoacetica, and it constitutes a novel pathway for oxalate metabolism.

摘要

热醋穆尔氏菌是一种厌氧乙酸生成菌,属于在土壤、动物胃肠道和反刍动物瘤胃中发现的细菌。该生物体利用 Wood-Ljungdahl 途径固定厌氧 CO2 进行异养或自养生长。本文描述了一种新的酶,草酸盐氧化还原酶(OOR),使热醋穆尔氏菌能够利用草酸盐生长,草酸盐在土壤中产生,是肾结石的常见成分。接触草酸盐会诱导 OOR 的三个亚基的表达,该酶将草酸盐氧化,同时产生两个电子和 CO2 或碳酸氢盐。与 2-氧代酸:铁氧还蛋白氧化还原酶家族的其他成员一样,OOR 含有硫胺素焦磷酸和三个 [Fe(4)S(4)]簇。然而,与该家族中以前表征的成员不同,OOR 不将辅酶 A 用作底物。草酸盐的氧化速率常数(k(cat))为 0.09 s(-1),在 pH 8 时的 K(m)为 58 μM。OOR 还氧化几种其他 2-氧代酸(不诱导 OOR),也不需要 CoA。该酶将其还原当量转移到广泛的电子受体,包括铁氧还蛋白和镍依赖的一氧化碳脱氢酶。与特征良好的 Wood-Ljungdahl 途径相结合,OOR 应该足以满足热醋穆尔氏菌对草酸盐代谢的需求,并且它构成了草酸盐代谢的新途径。