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二醇脱水酶激活因子是一种重激活酶——与二醇脱水酶的多次转化和亚基交换的证据。

Diol dehydratase-reactivating factor is a reactivase--evidence for multiple turnovers and subunit swapping with diol dehydratase.

机构信息

Department of Bioscience and Biotechnology, Graduate School of Natural Science and Technology, Okayama University, Japan.

出版信息

FEBS J. 2010 Dec;277(23):4931-43. doi: 10.1111/j.1742-4658.2010.07898.x. Epub 2010 Oct 29.

Abstract

Adenosylcobalamin-dependent diol dehydratase (DD) undergoes suicide inactivation by glycerol, one of its physiological substrates, resulting in the irreversible cleavage of the coenzyme Co-C bond. The damaged cofactor remains tightly bound to the active site. The DD-reactivating factor reactivates the inactivated holoenzyme in the presence of ATP and Mg(2+) by mediating the exchange of the tightly bound damaged cofactor for free intact coenzyme. In this study, we demonstrated that this reactivating factor mediates the cobalamin exchange not stoichiometrically but catalytically in the presence of ATP and Mg(2+). Therefore, we concluded that the reactivating factor is a sort of enzyme. It can be designated DD reactivase. The reactivase showed broad specificity for nucleoside triphosphates in the activation of the enzyme·cyanocobalamin complex. This result is consistent with the lack of specific interaction with the adenine ring of ADP in the crystal structure of the reactivase. The specificities of the reactivase for divalent metal ions were also not strict. DD formed 1:1 and 1:2 complexes with the reactivase in the presence of ADP and Mg(2+). Upon complex formation, one β subunit was released from the (αβ)₂ tetramer of the reactivase. This result, together with the similarity in amino acid sequences and folds between the DD β subunit and the reactivase β subunit, suggests that subunit displacement or swapping takes place upon formation of the enzyme·reactivase complex. This would result in the dissociation of the damaged cofactor from the inactivated holoenzyme, as suggested by the crystal structures of the reactivase and DD.

摘要

腺甘钴胺素依赖二醇脱水酶 (DD) 会被其生理底物之一甘油自杀失活,导致辅酶 Co-C 键不可逆断裂。受损的辅因子仍紧密结合在活性部位。DD 再激活因子在 ATP 和 Mg(2+) 的存在下通过介导紧密结合的受损辅因子与游离完整辅酶的交换,使失活的全酶再激活。在这项研究中,我们证明了这种再激活因子在 ATP 和 Mg(2+) 的存在下,以催化而非计量的方式介导钴胺素的交换。因此,我们得出结论,再激活因子是一种酶。它可以被指定为 DD 再激活酶。再激活酶在激活酶·氰钴胺素复合物时对核苷三磷酸显示出广泛的特异性。这一结果与再激活酶晶体结构中缺乏与 ADP 腺嘌呤环的特异性相互作用一致。再激活酶对二价金属离子的特异性也不严格。在 ADP 和 Mg(2+) 的存在下,DD 与再激活酶形成 1:1 和 1:2 复合物。在复合物形成过程中,一个β亚基从再激活酶的 (αβ)₂ 四聚体中释放出来。这一结果,加上 DD β亚基和再激活酶 β亚基之间氨基酸序列和折叠的相似性,表明在酶·再激活酶复合物形成时发生亚基置换或交换。这将导致失活全酶中受损辅因子的解离,正如再激活酶和 DD 的晶体结构所表明的那样。

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