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硫浅井深海菌(Thioprofundum hispidum)sp. nov.,一种严格依赖化能自养硫氧化的γ-变形菌,从骏河海山热液场分离得到,并提议在 Chromatiales 目下成立硫碱菌科(Thioalkalispiraceae)新科。

Thioprofundum hispidum sp. nov., an obligately chemolithoautotrophic sulfur-oxidizing gammaproteobacterium isolated from the hydrothermal field on Suiyo Seamount, and proposal of Thioalkalispiraceae fam. nov. in the order Chromatiales.

机构信息

Institute for Biological Resources and Functions, National Institute of Advanced Industrial Science and Technology (AIST), Tsukuba Central 6, 1-1-1 Higashi, Tsukuba, Ibaraki 305-8566, Japan.

Biological Resource Center (NBRC), National Institute of Technology and Evaluation (NITE), 2-5-8 Kazusakamatari, Kisarazu, Chiba 292-0818, Japan.

出版信息

Int J Syst Evol Microbiol. 2011 Oct;61(Pt 10):2412-2418. doi: 10.1099/ijs.0.026963-0. Epub 2010 Nov 12.

Abstract

A novel mesophilic, facultatively anaerobic, sulfur-oxidizing bacterial strain, designated gps61(T), was isolated from a surface rock sample collected from the hydrothermal field of Suiyo Seamount on the Izu-Bonin Arc in the Western Pacific Ocean. Cells of the isolate were rod-shaped with a single sheathed polar flagellum. Neither extensive internal membranes nor storage materials were present in the cells. In a 20 % CO(2) atmosphere, strain gps61(T) grew using thiosulfate, sulfur or tetrathionate as electron donors and oxygen or nitrate as electron acceptors. Other substrates, including organic acids and sugars, did not support growth, indicating that strain gps61(T) was an obligate chemolithoautotroph. 16S rRNA gene sequence analysis revealed that strain gps61(T) was closely related to Thioprofundum lithotrophicum 106(T) (98.5 % sequence similarity) in the order Chromatiales. Phylogenetic trees grouped strain gps61(T) and Thioprofundum lithotrophicum in the same cluster along with Thioalkalispira microaerophila and Thiohalophilus thiocyanoxidans, but it was apparent from the analysis that the novel strain had definitely departed from the family lineage. On the basis of its phylogenetic position along with its morphological and physiological characteristics, strain gps61(T) ( = NBRC 101261(T)  = DSM 18546(T)) represents a novel species of the genus Thioprofundum, for which the name Thioprofundum hispidum sp. nov. is proposed. In addition, we propose a novel family name, Thioalkalispiraceae, in the order Chromatiales, to accommodate the genera Thioalkalispira, Thiohalophilus and Thioprofundum.

摘要

从西太平洋伊豆-小笠原弧的热水场的表面岩石样本中分离到一株新型嗜中温、兼性厌氧、硫氧化细菌,命名为 gps61(T)。该分离株的细胞呈杆状,具有单一鞘状极鞭毛。细胞中既没有广泛的内膜,也没有储存物质。在 20% CO(2)气氛中,菌株 gps61(T)以硫代硫酸盐、硫或连四硫酸盐作为电子供体,以氧气或硝酸盐作为电子受体进行生长。其他底物,包括有机酸和糖,都不能支持生长,这表明菌株 gps61(T)是一种专性化能自养生物。16S rRNA 基因序列分析表明,菌株 gps61(T)与 Chromatiales 目中的 Thioprofundum lithotrophicum 106(T)(98.5%序列相似性)密切相关。系统发育树将菌株 gps61(T)和 Thioprofundum lithotrophicum 与 Thioalkalispira microaerophila 和 Thiohalophilus thiocyanoxidans 一起分组在同一个聚类中,但从分析中可以明显看出,该新菌株已经明显偏离了家族谱系。基于其系统发育位置以及形态和生理特征,菌株 gps61(T)( = NBRC 101261(T)  = DSM 18546(T))代表了 Thioprofundum 属的一个新种,提议将其命名为 Thioprofundum hispidum sp. nov.。此外,我们在 Chromatiales 目中提出了一个新的科名,Thioalkalispiraceae,以容纳 Thioalkalispira、Thiohalophilus 和 Thioprofundum 属。

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