Department of Chemistry and Biochemistry, UCLA, Los Angeles, California 90095, USA.
Protein Sci. 2011 Jan;20(1):168-78. doi: 10.1002/pro.550.
Protein crystallization continues to be a major bottleneck in X-ray crystallography. Previous studies suggest that symmetric proteins, such as homodimers, might crystallize more readily than monomeric proteins or asymmetric complexes. Proteins that are naturally monomeric can be made homodimeric artificially. Our approach is to create homodimeric proteins by introducing single cysteines into the protein of interest, which are then oxidized to form a disulfide bond between the two monomers. By introducing the single cysteine at different sequence positions, one can produce a variety of synthetically dimerized versions of a protein, with each construct expected to exhibit its own crystallization behavior. In earlier work, we demonstrated the potential utility of the approach using T4 lysozyme as a model system. Here we report the successful application of the method to Thermotoga maritima CelA, a thermophilic endoglucanase enzyme with low sequence identity to proteins with structures previously reported in the Protein Data Bank. This protein had resisted crystallization in its natural monomeric form, despite a broad survey of crystallization conditions. The synthetic dimerization of the CelA mutant D188C yielded well-diffracting crystals with molecules in a packing arrangement that would not have occurred with native, monomeric CelA. A 2.4 Å crystal structure was determined by single anomalous dispersion using a seleno-methionine derivatized protein. The results support the notion that synthetic symmetrization can be a useful approach for enlarging the search space for crystallizing monomeric proteins or asymmetric complexes.
蛋白质结晶仍然是 X 射线晶体学的主要瓶颈。先前的研究表明,对称蛋白,如同源二聚体,可能比单体蛋白或不对称复合物更容易结晶。天然单体的蛋白质可以通过人工方法变成同源二聚体。我们的方法是通过在感兴趣的蛋白质中引入单个半胱氨酸来创建同源二聚体蛋白质,然后将其氧化以在两个单体之间形成二硫键。通过在不同的序列位置引入单个半胱氨酸,可以产生蛋白质的各种合成二聚体版本,每个构建体预计都表现出自己的结晶行为。在早期的工作中,我们使用 T4 溶菌酶作为模型系统证明了该方法的潜在用途。在这里,我们报告了该方法在嗜热内葡聚糖酶 Thermotoga maritima CelA 中的成功应用,该酶与先前在蛋白质数据库中报道的结构的蛋白质的序列同一性较低。尽管对结晶条件进行了广泛的调查,但该蛋白质仍以其自然单体形式抵抗结晶。CelA 突变体 D188C 的合成二聚化产生了具有良好衍射的晶体,其分子的包装排列方式与天然单体 CelA 不会发生。使用硒代甲硫氨酸衍生的蛋白质通过单异常分散法确定了 2.4 Å 的晶体结构。结果支持了这样的观点,即合成对称化可以成为扩大结晶单体蛋白或不对称复合物的搜索空间的有用方法。